| Literature DB >> 32455813 |
Déborah Gómez-Domínguez1, Carolina Epifano2, Fernando de Miguel1,3, Albert García Castaño4, Borja Vilaplana-Martí1, Alberto Martín1, Sandra Amarilla-Quintana5, Anne T Bertrand6, Gisèle Bonne6, Javier Ramón-Azcón4,7, Miguel A Rodríguez-Milla1, Ignacio Pérez de Castro1.
Abstract
Laminopathies are causally associated with mutations on the Lamin A/C gene (LMNA). To date, more than 400 mutations in LMNA have been reported in patients. These mutations are widely distributed throughout the entire gene and are associated with a wide range of phenotypes. Unfortunately, little is known about the mechanisms underlying the effect of the majority of these mutations. This is the case of more than 40 mutations that are located at exon 4. Using CRISPR/Cas9 technology, we generated a collection of Lmna exon 4 mutants in mouse C2C12 myoblasts. These cell models included different types of exon 4 deletions and the presence of R249W mutation, one of the human variants associated with a severe type of laminopathy, LMNA-associated congenital muscular dystrophy (L-CMD). We characterized these clones by measuring their nuclear circularity, myogenic differentiation capacity in 2D and 3D conditions, DNA damage, and levels of p-ERK and p-AKT (phosphorylated Mitogen-Activated Protein Kinase 1/3 and AKT serine/threonine kinase 1). Our results indicated that Lmna exon 4 mutants showed abnormal nuclear morphology. In addition, levels and/or subcellular localization of different members of the lamin and LINC (LInker of Nucleoskeleton and Cytoskeleton) complex were altered in all these mutants. Whereas no significant differences were observed for ERK and AKT activities, the accumulation of DNA damage was associated to the Lmna p.R249W mutant myoblasts. Finally, significant myogenic differentiation defects were detected in the Lmna exon 4 mutants. These results have key implications in the development of future therapeutic strategies for the treatment of laminopathies.Entities:
Keywords: CRISPR; LMNA; laminopathy; nuclear envelope
Mesh:
Substances:
Year: 2020 PMID: 32455813 PMCID: PMC7291140 DOI: 10.3390/cells9051286
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Key resources used in this work.
| ANTIBODIES | |||
|---|---|---|---|
| Name | Source (identifier) | Western | Immuno- |
| Anti-mouse Lamin A/C (E-1) | Santa Cruz Biotechnology (Dallas, Texas, USA) (sc-376248) | 1:3000 | 1:500 |
| Anti-mouse α-tubulin | Sigma-Aldrich (St. Louis, MI, USA) (T9026) | 1:5000 | |
| Anti-rabbit lamin B1 | Abcam (Cambridge, UK) (ab16048) | 1:100 | |
| Anti-rabbit emerin (D3B9G) | Cell Signaling (Danvers, MA, USA) (#30853) | 1:100 | |
| Anti-mouse Sad1 And UNC84 Domain Containing 1 (SUN1) BBmSun1 IgC2b X12.11 | Donated by Dr. Colin Stewart | 1:50 | 1:50 |
| Anti-rabbit SUN2 (Sad1 And UNC84 Domain Containing 2) 11905 | Donated by Dr. Eric Schirmer | 1:500 | 1:200 |
| Anti-rabbit p44/42 Mitogen-Activated Protein Kinase 1/3 (Erk1/2)-137F5 | Cell Signaling (Danvers, MA, USA) (#4695) | 1:1000 | |
| Anti-rabbit phospho-p44/42 MAPK Erk1/2 Thr202/Tyr204 D13.14.4E | Cell Signaling (Danvers, MA, USA) (#4370) | 1:1000 | |
| Anti-mouse Akt (pan) 40D4 | Cell Signaling (Danvers, MA, USA) (#2920) | 1:1000 | |
| Anti-rabbit phospho-Akt (Ser473) D9E | Cell Signaling (Danvers, MA, USA) (#4060) | 1:1000 | |
| Anti-mouse phospho-histone H2A.X (Ser139) | Millipore (Burlington, MA, USA) (05-636-I) | 1:500 | |
| Anti-MYH7 (Myosin Heavy Chain 7) | Thermofisher (Waltham, MA, USA) (PA5-69132) | 1:200 | |
| MF20 (Mouse Monoclonal Anti-Myosin Heavy Chain Antibody) | DSHB Hybridoma (Iowa City, Iowa, USA) | 1:50 | |
| Rhodamine phalloidin | Thermofisher (Waltham, MA, USA) (R415) | 1:40 | |
| HRP-labelled anti-mouse secondary antibody | GE Healthcare (Chicago, Illinois, USA) (NA931-1ML) | 1:5000 | |
| HRP-labelled anti-rabbit secondary antibody | GE Healthcare (Chicago, Illinois, USA) (NA934-1ML) | 1:5000 | |
| Goat anti-mouse Alexa Fluor 488 | Thermofisher Scientific (Waltham, MA, USA) (A32723) | 1:500 | |
| Goat anti-rabbit Alexa Fluor 594 | Thermofisher Scientific (Waltham, MA, USA) (A32740) | 1:500 | |
| Goat anti-rabbit Alexa Fluor 488 | Thermofisher Scientific (Waltham, MA, USA) (A32731) | 1:500 | |
| Goat anti-rabbit Alexa Fluor 488 (3D models) | Thermofisher (Waltham, MA, USA) (A11034) | 1:200 | |
|
|
| ||
| C2C12 myoblasts/SIGMA (St. Louis, MI, USA) (91031101) | pX459 vector (pSpCas9(BB)-2A-Puro)/Addgene (Watertown, MA, USA) (#62988) | ||
| DMEM (Dulbecco’s modified Eagle’s medium) high glucose/Invitrogen (Waltham, MA, USA) (61965-026) | Lipofectamine 3000/Invitrogen (Waltham, MA, USA) (L3000015) | ||
| FBS (fetal bovine serum)/Sigma-Aldrich (St. Louis, MI, USA) (#F7524-500ML) | Puromycin/InvivoGen (San Diego, CA, USA) (ant-pr-1) | ||
| Penicillin/streptomycin/Lonza (Basel, Switzerland) (#DE17-602E) | DNA polymerase/NZYTech (Lisbon, Portugal) (MB354) | ||
| Medium 199/Invitrogen (Waltham, MA, USA) (41150020) | MiSeq DNA/Illumina (San Diego, CA, USA) (MS-102-2003) | ||
| Fetuin/Life Technologies (Waltham, MA, USA) (10344026) | BCA system/Pierce (Waltham, MA, USA) (23227) | ||
| hEGF/Life Technologies (Waltham, MA, USA) (PHG0311) | ECL western blotting system/Thermo Fisher Scientific (Waltham, MA, USA) (Pierce 32106) | ||
| bFGF/Life Technologies (Waltham, MA, USA) (PHG0026) | Methanol/Panreac AppliChem (Barcelona, Spain) (#131091.1612) | ||
| Insuline/Sigma (St. Louis, MI, USA) (91077C-1G) | BSA (bovine serum albumin)/Sigma-Aldrich (St. Louis, MI, USA) (#A7906) | ||
| Dexamethasone/Sigma (St. Louis, MI, USA) (D4902-100mg) | PBS (phosphate-buffered saline)/Lonza (Basel, Switzerland) (#BE17-515Q) | ||
| Horse serum/Thermofisher (Waltham, MA, USA) (#26050-088) | Goat serum/Sigma-Aldrich (St. Louis, MI, USA) (#G9023-10ML) | ||
|
| Donkey serum/Sigma-Aldrich (St. Louis, MI, USA) (#D9663-10ML) | ||
| CRISPResso ( | Triton X-100/Sigma-Aldrich (St. Louis, MI, USA) (#X100-1L) | ||
| TIDE ( | Prolong Gold with 4′,6-Diamidino-2-Phenylindole (DAPI)/Cell Signalling Technology (Danvers, MA, USA) (P36935) | ||
| ImageJ (U.S. National Institutes of Health, Bethesda, Maryland, USA) | TBS (Tris-buffered saline)/Canvax Biotech (Cordoba, Spain) (BR0042) | ||
| Prism 8 (GraphPad Software, Inc) | Hoechst 33324/Thermo Fisher Scientific (Waltham, MA, USA) (H3570) | ||
DNA sequences used in this work.
| Name and 5′ to 3′ Sequence |
|---|
| sg10: CCGGCTGGCAGATGCCCTGCAGG |
| sg11: GCGGGCTCAGCATGAGGACCAGG |
| sg12: GGTCCACCTTGTCATATTCTTCC |
| ssODNmex4g10: GTGGAGATCGATAACGGGAAGCAGCGAGAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCTCAGCATGAGGACCAGGTGGAACAGTATAAGAAGGAGCT |
| ssODNmex4g11: GAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCTCAGCATGAGGACCAGGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAGGTGCT |
| ssODNmex4g12: AGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCTCAGCATGAGGACCAGGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAGTGCTGGCCTCAT |
| ssODNmex4g10mut: GTGGAGATCGATAACGGGAAGCAGCGAGAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAAGAGCTCTGGGCTCAGCATGAGGACCAGGTGGAACAGTATAAGAAGGAGCT |
| ssODNmex4g10mut2: GTGGAGATCGATAACGGGAAGCAGCGAGAGTTTGAGAGCCGTCTTGCCGACGCACTTCAAGAGCTCTGGGCTCAGCATGAGGACCAGGTGGAACAGTATAAGAAGGAGCT |
| ssODNmex4g11mut: GAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCTCAGCATGAGGACCAAGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAGGTGCT |
| ssODNmex4g11mut2: GAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCACAACACGAAGATCAAGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAGGTGCT |
| ssODNmex4g12mut: AGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCTCAGCATGAGGATCAGGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAGTGCTGGCCTCAT |
| ssODNmex4g12mut2: AGAGCCGGCTGGCAGATGCCCTGCAGGAGCTCTGGGCTCAGCATGAGGATCATGTTGAGCAATACAAAAAAGAGCTAGAAAAGACATACTCCGCCAAGTGCTGGCCTCAT |
| DeepSeq-Fw: TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAGGCGAGTGGATGCTGAG |
| DeepSeq-Rv: GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGTCAATGCGGATTCGAGACT |
| Sanger-mLmna_Ex4_Fw: CCAGGCTAAGCGAGGGCTGC |
| Sanger-mLmna_Ex4_Rv: CCTGAGGAAGGCATCCCTGG |
Figure 1Generation of Lamin A/C gene (Lmna) exon 4 mutations using CRISPR/Cas technology. (A) Scheme for exon 4 Lmna sgRNA localization. (B) Work-flow followed for the generation of C2C12 cells carrying mutations in Lmna exon 4.
Molecular properties of the selected clones.
| ID | Type | CDS (1) | Protein (Expected) |
|---|---|---|---|
| 459-A6 | Control | wt/wt | p.(666*)/p.(666*) (665 aa) |
| 459-B4 | wt/wt | p.(666*)/p.(666*) (665 aa) | |
| g10L-A2 | Null | c. 734_735del | p.(252*) (251 aa) |
| g11Hm-8 | c. [757_758ins] [758_810del] | p.(263*) (262 aa) | |
| g12Hm2-3 | c. [767del] [811subsC > G] | p.(263*) (262 aa) | |
| g12Lm2-3 | c. [739_740ins] [740_761del] [766_767GT > AG] | p.(273*) (272 aa) | |
| g12Lm2-5 | c. [del767]/c. [del769] | p.(263*) (262 aa)/p.(263*) (262 aa) | |
| g10L-A1 | Delta1 | c.734_736del (loss of 3 nt) | p.Leu245del (loss of 1 aa) |
| g11Hm2-1 | Delta7-1 | c.754_774del (loss of 21 nt) | p.His252_Gln258del (loss of 7 aa) |
| g11Hm2-10 | Delta7-10 | c.754_774del (loss of 21 nt) | p.His252_Gln258del (loss of 7 aa) |
| g10Hm-5 | Delta14 | c.707_748del (loss of 42 nt) | p.Glu236_Arg249del (loss of 14 aa) |
| g12Hm-6 | Delta15 | c.766_810del (loss of 45 nt) | p.Val256_Lys270del (loss of 15 aa) |
| g10H-A4 | Delta57 | c. [726_727ins] [727_1967del]/c. 640_810del | p.(252*) (251 aa)/p.Glu214_Lys270del (loss of 57 aa) |
| g11H-D6 | R249W | c. [744_745subsGC > CT] [750subsT > G] | p.Arg249Tryp (665 aa) |
1 Obtained by deep sequencing.
Figure 2Components of the nuclear lamin were abnormally distributed in Lmna exon 4 mutant myoblasts. (A) Lamin A and C levels were reduced in Lmna exon 4 mutants. Quantification of Lamin A and C protein levels. Left pictures show one of the three independent biological replicates analyzed. The other replicates are included in Figure S5. Quantification of Lamin A/C signal in the three independent analyses, by mutant type, is shown on the right. Bars are mean ± SEM. Two-tailed, unpaired Student’s t-test: **** p < 0.0001, *** p = 0.003, n = 4. (B) Mouse myoblasts were immunostained for Lamin A/C, Lamin B1, and Emerin. Representative single confocal images from nuclei are shown for each Lmna group. Extra-nuclear signal was observed for Emerin in null, delta, and R249W mutants (arrows). Scale bar = 8 μm. Right plots show average fluorescence intensity across nuclei by mutant type (control (blue): three clones; null (purple): five clones; delta (orange): six clones; R249W (green): one clone; n = 5 nuclei per clone). Peaks at both ends of the plot represent peripheral staining. Representative images from other clones are shown in Figure S4 (Lamin A/C), Figure S6 (Lamin B1), and Figure S7 (Emerin).
Figure 3Nuclear morphology was altered in mouse myoblasts carrying Lmna exon 4 mutations. (A) Circularity index was calculated in nuclei from clones asynchronously growing in 2D cultures (**** p < 0.0001; n > 5000 nuclei per clone). (B) Plot shows the circularity index from clones encapsulated in a 3D pattern. Data were compared using an unpaired Mann–Whitney U test (**** p < 0.0001). Blue, purple, green, and orange colors indicate control, null, R249W, and delta clones, respectively.
Figure 4Myogenic differentiation was impaired in mouse myoblasts with mutations in Lmna exon 4. (A) Myoblasts growing in 2D conditions were induced to differentiate to myogenic fiber as described in Section 2. Representative pictures show myosin heavy chain (MHC, green) and nuclei (DAPI, blue). Scale bar = 60 µm. (B) Myogenic fiber formation was also affected in 3D models. Representative pictures show, at 7 days post-differentiation, myosin heavy chain 7 (green), nuclei (blue), and phalloidin staining (red). Control and null samples correspond to 459-A6 and g12Lm2-3 clones. Scale bar = 50 µm. Single color channels for this panel are shown in Figure S8.
Figure 5SUN1 and SUN2 protein levels and sub-cellular localization in Lmna exon 4 mutant myoblasts. (A) Total amount of SUN1 and SUN2 proteins was determined by Western blot. One of the three biological replicates is shown. The rest of the Western blots are shown in Figure S5. Quantification, by mutant type, of SUN1 and SUN2 signals for the three independent analyses is shown in the graphs on the right. Bars are mean ± SEM, n = 3. No significant differences were detected when mutants were compared with controls using a two-tailed, unpaired Student’s t-test. Representative, single, confocal, images of SUN1 (B) and SUN2 (C) detected by immunostaining are shown. A decreased nuclear envelope signal was observed in null, delta, and R249W mutants. Scale bar = 8 μm. Right plots show average fluorescence intensity across nuclei by mutant type (control (blue): three clones; null (purple): five clones; delta (orange): six clones; R249W (green): one clone; n = 5 nuclei per clone). Peaks at both ends of the plot represent peripheral staining. Representative images for SUN1 and SUN2 in all the clones are shown in Figures S9 and S10, respectively.
Figure 6No differences in ERK1/2 and AKT activation were detected in Lmna exon 4 mutant myoblasts. (A) Representative immunoblot for the detection of phosphorylated (pERK) and total (ERK) ERK1/2 in Lmna exon 4 mutants. (B) Representative immunoblot for the detection of phosphorylated (pAKT) and total (AKT) AKT. Detection of α-tubulin was used in all the cases as loading control. Data in bar graphs are mean ± SEM of all the clones of each type, n = 3. No significant differences were detected when mutants were compared with controls using a two-tailed, unpaired Student’s t-test. The remainder of the Western blots analyzed in (A) and (B) are shown in Figure S5.
Figure 7High levels of DNA damage were specifically associated with LMNA R249W mutation. (A) Representative immunoblot showing γH2AX levels in Lmna exon 4 mutant myoblasts. (B) Immunoblot showing γH2AX levels in human myoblasts from two controls and one patient carrying the p.R249W mutation. Detection of α-tubulin was used in all the cases as loading control. Data in bar graphs are mean ± SEM, n = 3. In (A) and (B), data were compared using a two-tailed, unpaired Student’s t-test. * p < 0.05. The remainder of the Western blots analyzed in (A) and (B) are shown in Figure S5.