Literature DB >> 32452197

Evidence for the Supramolecular Organization of a Bacterial Outer-Membrane Protein from In Vivo Pulse Electron Paramagnetic Resonance Spectroscopy.

David A Nyenhuis, Thushani D Nilaweera, Jessica K Niblo, Nhu Q Nguyen, Kateri H DuBay, David S Cafiso.   

Abstract

In the outer membrane of Gram-negative bacteria, membrane proteins are thought to be organized into domains or islands that play a role in the segregation, movement, and turnover of membrane components. However, there is presently limited information on the structure of these domains or the molecular interactions that mediate domain formation. In the present work, the Escherichia coli outer membrane vitamin B12 transporter, BtuB, was spin-labeled, and double electron-electron resonance was used to measure the distances between proteins in intact cells. These data together with Monte Carlo simulations provide evidence for the presence of specific intermolecular contacts between BtuB monomers that could drive the formation of string-like oligomers. Moreover, the EPR data provide evidence for the location of the interacting interfaces and indicate that lipopolysaccharide mediates the contacts between BtuB monomers.

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Year:  2020        PMID: 32452197      PMCID: PMC7336812          DOI: 10.1021/jacs.0c01754

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  CHARMM-GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides.

Authors:  Pin-Chia Hsu; Bart M H Bruininks; Damien Jefferies; Paulo Cesar Telles de Souza; Jumin Lee; Dhilon S Patel; Siewert J Marrink; Yifei Qi; Syma Khalid; Wonpil Im
Journal:  J Comput Chem       Date:  2017-08-03       Impact factor: 3.376

2.  G protein-coupled receptors self-assemble in dynamics simulations of model bilayers.

Authors:  Xavier Periole; Thomas Huber; Siewert-Jan Marrink; Thomas P Sakmar
Journal:  J Am Chem Soc       Date:  2007-07-21       Impact factor: 15.419

3.  The Polymerase Incomplete Primer Extension (PIPE) method applied to high-throughput cloning and site-directed mutagenesis.

Authors:  Heath E Klock; Scott A Lesley
Journal:  Methods Mol Biol       Date:  2009

4.  Multiple extracellular loops contribute to substrate binding and transport by the Escherichia coli cobalamin transporter BtuB.

Authors:  Cynthia A Fuller-Schaefer; Robert J Kadner
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

5.  High-resolution architecture of the outer membrane of the Gram-negative bacteria Roseobacter denitrificans.

Authors:  Szymon Jarosławski; Katia Duquesne; James N Sturgis; Simon Scheuring
Journal:  Mol Microbiol       Date:  2009-10-15       Impact factor: 3.501

6.  Suppression of ghost distances in multiple-spin double electron-electron resonance.

Authors:  Tona von Hagens; Yevhen Polyhach; Muhammad Sajid; Adelheid Godt; Gunnar Jeschke
Journal:  Phys Chem Chem Phys       Date:  2013-03-13       Impact factor: 3.676

7.  Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class.

Authors:  Daniel L Parton; Jochen W Klingelhoefer; Mark S P Sansom
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

8.  Active transport of an antibiotic rifamycin derivative by the outer-membrane protein FhuA.

Authors:  A D Ferguson; J Ködding; G Walker; C Bös; J W Coulton; K Diederichs; V Braun; W Welte
Journal:  Structure       Date:  2001-08       Impact factor: 5.006

9.  Solutes alter the conformation of the ligand binding loops in outer membrane transporters.

Authors:  Miyeon Kim; Qi Xu; David Murray; David S Cafiso
Journal:  Biochemistry       Date:  2007-12-20       Impact factor: 3.162

Review 10.  Protein-protein interactions and the spatiotemporal dynamics of bacterial outer membrane proteins.

Authors:  Colin Kleanthous; Patrice Rassam; Christoph G Baumann
Journal:  Curr Opin Struct Biol       Date:  2015-11-26       Impact factor: 6.809

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  5 in total

1.  Native Cell Environment Constrains Loop Structure in the Escherichia coli Cobalamin Transporter BtuB.

Authors:  David A Nyenhuis; Thushani D Nilaweera; David S Cafiso
Journal:  Biophys J       Date:  2020-09-06       Impact factor: 4.033

2.  Protein functional dynamics from the rigorous global analysis of DEER data: Conditions, components, and conformations.

Authors:  Eric J Hustedt; Richard A Stein; Hassane S Mchaourab
Journal:  J Gen Physiol       Date:  2021-09-16       Impact factor: 4.086

3.  In situ EPR spectroscopy of a bacterial membrane transporter using an expanded genetic code.

Authors:  Anandi Kugele; Sophie Ketter; Bjarne Silkenath; Valentin Wittmann; Benesh Joseph; Malte Drescher
Journal:  Chem Commun (Camb)       Date:  2021-12-03       Impact factor: 6.222

4.  Divide and Conquer: A Tailored Solid-state NMR Approach to Study Large Membrane Protein Complexes.

Authors:  ShengQi Xiang; Cecilia Pinto; Marc Baldus
Journal:  Angew Chem Int Ed Engl       Date:  2022-07-07       Impact factor: 16.823

Review 5.  EPR Spectroscopy Provides New Insights into Complex Biological Reaction Mechanisms.

Authors:  Lukas Hofmann; Sharon Ruthstein
Journal:  J Phys Chem B       Date:  2022-09-22       Impact factor: 3.466

  5 in total

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