Literature DB >> 32451488

Viral hijacking of the TENT4-ZCCHC14 complex protects viral RNAs via mixed tailing.

Dongwan Kim1,2, Young-Suk Lee1,2, Soo-Jin Jung1,2, Jinah Yeo1,2,3, Jenny J Seo1,2, Young-Yoon Lee1,2, Jaechul Lim1,2,4, Hyeshik Chang1,2, Jaewon Song1,2, Jihye Yang1,2, Jong-Seo Kim1,2, Guhung Jung2, Kwangseok Ahn1,2, V Narry Kim5,6.   

Abstract

TENT4 enzymes generate 'mixed tails' of diverse nucleotides at 3' ends of RNAs via nontemplated nucleotide addition to protect messenger RNAs from deadenylation. Here we discover extensive mixed tailing in transcripts of hepatitis B virus (HBV) and human cytomegalovirus (HCMV), generated via a similar mechanism exploiting the TENT4-ZCCHC14 complex. TAIL-seq on HBV and HCMV RNAs revealed that TENT4A and TENT4B are responsible for mixed tailing and protection of viral poly(A) tails. We find that the HBV post-transcriptional regulatory element (PRE), specifically the CNGGN-type pentaloop, is critical for TENT4-dependent regulation. HCMV uses a similar pentaloop, an interesting example of convergent evolution. This pentaloop is recognized by the sterile alpha motif domain-containing ZCCHC14 protein, which in turn recruits TENT4. Overall, our study reveals the mechanism of action of PRE, which has been widely used to enhance gene expression, and identifies the TENT4-ZCCHC14 complex as a potential target for antiviral therapeutics.

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Year:  2020        PMID: 32451488     DOI: 10.1038/s41594-020-0427-3

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  62 in total

1.  U-tail as a guardian against invading RNAs.

Authors:  Jinah Yeo; V Narry Kim
Journal:  Nat Struct Mol Biol       Date:  2018-10       Impact factor: 15.369

2.  Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation.

Authors:  Jaechul Lim; Dongwan Kim; Young-Suk Lee; Minju Ha; Mihye Lee; Jinah Yeo; Hyeshik Chang; Jaewon Song; Kwangseog Ahn; V Narry Kim
Journal:  Science       Date:  2018-07-19       Impact factor: 47.728

3.  TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications.

Authors:  Hyeshik Chang; Jaechul Lim; Minju Ha; V Narry Kim
Journal:  Mol Cell       Date:  2014-02-27       Impact factor: 17.970

4.  Terminal Uridylyltransferases Execute Programmed Clearance of Maternal Transcriptome in Vertebrate Embryos.

Authors:  Hyeshik Chang; Jinah Yeo; Jeong-Gyun Kim; Hyunjoon Kim; Jaechul Lim; Mihye Lee; Hyun Ho Kim; Jiyeon Ohk; Hee-Yeon Jeon; Hyunsook Lee; Hosung Jung; Kyu-Won Kim; V Narry Kim
Journal:  Mol Cell       Date:  2018-04-05       Impact factor: 17.970

Review 5.  Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity.

Authors:  Karyn Schmidt; J Scott Butler
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-02-15       Impact factor: 9.957

6.  PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Authors:  Joost Boele; Helena Persson; Jay W Shin; Yuri Ishizu; Inga S Newie; Rolf Søkilde; Shannon M Hawkins; Cristian Coarfa; Kazuhiro Ikeda; Ken-ichi Takayama; Kuniko Horie-Inoue; Yoshinari Ando; A Maxwell Burroughs; Chihiro Sasaki; Chizuru Suzuki; Mizuho Sakai; Shintaro Aoki; Ayumi Ogawa; Akira Hasegawa; Marina Lizio; Kaoru Kaida; Bas Teusink; Piero Carninci; Harukazu Suzuki; Satoshi Inoue; Preethi H Gunaratne; Carlos Rovira; Yoshihide Hayashizaki; Michiel J L de Hoon
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

7.  PARN and TOE1 Constitute a 3' End Maturation Module for Nuclear Non-coding RNAs.

Authors:  Ahyeon Son; Jong-Eun Park; V Narry Kim
Journal:  Cell Rep       Date:  2018-04-17       Impact factor: 9.423

8.  Uridylation by TUT4 and TUT7 marks mRNA for degradation.

Authors:  Jaechul Lim; Minju Ha; Hyeshik Chang; S Chul Kwon; Dhirendra K Simanshu; Dinshaw J Patel; V Narry Kim
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

Review 9.  Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.

Authors:  Zbigniew Warkocki; Vladyslava Liudkovska; Olga Gewartowska; Seweryn Mroczek; Andrzej Dziembowski
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

10.  Inhibition of telomerase RNA decay rescues telomerase deficiency caused by dyskerin or PARN defects.

Authors:  Siddharth Shukla; Jens C Schmidt; Katherine C Goldfarb; Thomas R Cech; Roy Parker
Journal:  Nat Struct Mol Biol       Date:  2016-03-07       Impact factor: 15.369

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  14 in total

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Authors:  Matthew D Tyl; Cora N Betsinger; Ileana M Cristea
Journal:  Curr Opin Virol       Date:  2021-12-16       Impact factor: 7.090

Review 2.  Roles of mRNA poly(A) tails in regulation of eukaryotic gene expression.

Authors:  Lori A Passmore; Jeff Coller
Journal:  Nat Rev Mol Cell Biol       Date:  2021-09-30       Impact factor: 94.444

3.  The ZCCHC14/TENT4 complex is required for hepatitis A virus RNA synthesis.

Authors:  You Li; Ichiro Misumi; Tomoyuki Shiota; Lu Sun; Erik M Lenarcic; Hyejeong Kim; Takayoshi Shirasaki; Adriana Hertel-Wulff; Taylor Tibbs; Joseph E Mitchell; Kevin L McKnight; Craig E Cameron; Nathaniel J Moorman; David R McGivern; John M Cullen; Jason K Whitmire; Stanley M Lemon
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-07       Impact factor: 12.779

4.  Analyzing viral epitranscriptomes using nanopore direct RNA sequencing.

Authors:  Ari Hong; Dongwan Kim; V Narry Kim; Hyeshik Chang
Journal:  J Microbiol       Date:  2022-08-24       Impact factor: 2.902

5.  The Dihydroquinolizinone Compound RG7834 Inhibits the Polyadenylase Function of PAPD5 and PAPD7 and Accelerates the Degradation of Matured Hepatitis B Virus Surface Protein mRNA.

Authors:  Liren Sun; Fang Zhang; Fang Guo; Fei Liu; Jessie Kulsuptrakul; Andreas Puschnik; Min Gao; Rene Rijnbrand; Michael Sofia; Timothy Block; Tianlun Zhou
Journal:  Antimicrob Agents Chemother       Date:  2020-12-16       Impact factor: 5.191

6.  HIV-1 sequences in lentiviral vector genomes can be substantially reduced without compromising transduction efficiency.

Authors:  Helin Sertkaya; Mattia Ficarelli; Nathan P Sweeney; Hannah Parker; Conrad A Vink; Chad M Swanson
Journal:  Sci Rep       Date:  2021-06-08       Impact factor: 4.996

7.  Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2.

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Journal:  Elife       Date:  2021-09-30       Impact factor: 8.140

8.  The m6A(m)-independent role of FTO in regulating WNT signaling pathways.

Authors:  Hyunjoon Kim; Soohyun Jang; Young-Suk Lee
Journal:  Life Sci Alliance       Date:  2022-02-15

Review 9.  Functions and mechanisms of RNA tailing by metazoan terminal nucleotidyltransferases.

Authors:  Vladyslava Liudkovska; Andrzej Dziembowski
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-07-22       Impact factor: 9.957

10.  Human Cytomegalovirus RNA2.7 Is Required for Upregulating Multiple Cellular Genes To Promote Cell Motility and Viral Spread Late in Lytic Infection.

Authors:  Betty Lau; Karen Kerr; Salvatore Camiolo; Katie Nightingale; Quan Gu; Robin Antrobus; Nicolás M Suárez; Colin Loney; Richard J Stanton; Michael P Weekes; Andrew J Davison
Journal:  J Virol       Date:  2021-08-04       Impact factor: 6.549

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