Literature DB >> 32451460

Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer.

Hae-Ock Lee1,2, Yourae Hong1,3, Hakki Emre Etlioglu4, Yong Beom Cho3,5, Valentina Pomella4, Ben Van den Bosch4, Jasper Vanhecke4, Sara Verbandt4, Hyekyung Hong5, Jae-Woong Min1, Nayoung Kim1,2, Hye Hyeon Eum1,2, Junbin Qian6,7, Bram Boeckx6,7, Diether Lambrechts6,7, Petros Tsantoulis8,9,10, Gert De Hertogh11,12, Woosung Chung1, Taeseob Lee1,13, Minae An1,3, Hyun-Tae Shin1, Je-Gun Joung1, Min-Hyeok Jung14, Gunhwan Ko15, Pratyaksha Wirapati16, Seok Hyung Kim17, Hee Cheol Kim5, Seong Hyeon Yun5, Iain Bee Huat Tan18,19,20, Bobby Ranjan21, Woo Yong Lee5, Tae-You Kim22, Jung Kyoon Choi23, Young-Joon Kim14,24, Shyam Prabhakar21, Sabine Tejpar25, Woong-Yang Park26,27,28.   

Abstract

Immunotherapy for metastatic colorectal cancer is effective only for mismatch repair-deficient tumors with high microsatellite instability that demonstrate immune infiltration, suggesting that tumor cells can determine their immune microenvironment. To understand this cross-talk, we analyzed the transcriptome of 91,103 unsorted single cells from 23 Korean and 6 Belgian patients. Cancer cells displayed transcriptional features reminiscent of normal differentiation programs, and genetic alterations that apparently fostered immunosuppressive microenvironments directed by regulatory T cells, myofibroblasts and myeloid cells. Intercellular network reconstruction supported the association between cancer cell signatures and specific stromal or immune cell populations. Our collective view of the cellular landscape and intercellular interactions in colorectal cancer provide mechanistic information for the design of efficient immuno-oncology treatment strategies.

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Year:  2020        PMID: 32451460     DOI: 10.1038/s41588-020-0636-z

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  74 in total

1.  Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.

Authors:  Huipeng Li; Elise T Courtois; Debarka Sengupta; Yuliana Tan; Kok Hao Chen; Jolene Jie Lin Goh; Say Li Kong; Clarinda Chua; Lim Kiat Hon; Wah Siew Tan; Mark Wong; Paul Jongjoon Choi; Lawrence J K Wee; Axel M Hillmer; Iain Beehuat Tan; Paul Robson; Shyam Prabhakar
Journal:  Nat Genet       Date:  2017-03-20       Impact factor: 38.330

2.  Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.

Authors:  Lei Zhang; Xin Yu; Liangtao Zheng; Yuanyuan Zhang; Yansen Li; Qiao Fang; Ranran Gao; Boxi Kang; Qiming Zhang; Julie Y Huang; Hiroyasu Konno; Xinyi Guo; Yingjiang Ye; Songyuan Gao; Shan Wang; Xueda Hu; Xianwen Ren; Zhanlong Shen; Wenjun Ouyang; Zemin Zhang
Journal:  Nature       Date:  2018-10-29       Impact factor: 49.962

Review 3.  Understanding the tumor immune microenvironment (TIME) for effective therapy.

Authors:  Mikhail Binnewies; Edward W Roberts; Kelly Kersten; Vincent Chan; Douglas F Fearon; Miriam Merad; Lisa M Coussens; Dmitry I Gabrilovich; Suzanne Ostrand-Rosenberg; Catherine C Hedrick; Robert H Vonderheide; Mikael J Pittet; Rakesh K Jain; Weiping Zou; T Kevin Howcroft; Elisa C Woodhouse; Robert A Weinberg; Matthew F Krummel
Journal:  Nat Med       Date:  2018-04-23       Impact factor: 53.440

4.  Phenotype molding of stromal cells in the lung tumor microenvironment.

Authors:  Diether Lambrechts; Els Wauters; Bram Boeckx; Sara Aibar; David Nittner; Oliver Burton; Ayse Bassez; Herbert Decaluwé; Andreas Pircher; Kathleen Van den Eynde; Birgit Weynand; Erik Verbeken; Paul De Leyn; Adrian Liston; Johan Vansteenkiste; Peter Carmeliet; Stein Aerts; Bernard Thienpont
Journal:  Nat Med       Date:  2018-07-09       Impact factor: 53.440

Review 5.  Consensus molecular subtypes and the evolution of precision medicine in colorectal cancer.

Authors:  Rodrigo Dienstmann; Louis Vermeulen; Justin Guinney; Scott Kopetz; Sabine Tejpar; Josep Tabernero
Journal:  Nat Rev Cancer       Date:  2017-01-04       Impact factor: 60.716

6.  Immune and Stromal Classification of Colorectal Cancer Is Associated with Molecular Subtypes and Relevant for Precision Immunotherapy.

Authors:  Etienne Becht; Aurélien de Reyniès; Nicolas A Giraldo; Camilla Pilati; Bénédicte Buttard; Laetitia Lacroix; Janick Selves; Catherine Sautès-Fridman; Pierre Laurent-Puig; Wolf Herman Fridman
Journal:  Clin Cancer Res       Date:  2016-03-18       Impact factor: 12.531

7.  Integrating single-cell transcriptomic data across different conditions, technologies, and species.

Authors:  Andrew Butler; Paul Hoffman; Peter Smibert; Efthymia Papalexi; Rahul Satija
Journal:  Nat Biotechnol       Date:  2018-04-02       Impact factor: 54.908

Review 8.  Understanding tumor ecosystems by single-cell sequencing: promises and limitations.

Authors:  Xianwen Ren; Boxi Kang; Zemin Zhang
Journal:  Genome Biol       Date:  2018-12-03       Impact factor: 13.583

9.  The consensus molecular subtypes of colorectal cancer.

Authors:  Justin Guinney; Rodrigo Dienstmann; Xin Wang; Aurélien de Reyniès; Andreas Schlicker; Charlotte Soneson; Laetitia Marisa; Paul Roepman; Gift Nyamundanda; Paolo Angelino; Brian M Bot; Jeffrey S Morris; Iris M Simon; Sarah Gerster; Evelyn Fessler; Felipe De Sousa E Melo; Edoardo Missiaglia; Hena Ramay; David Barras; Krisztian Homicsko; Dipen Maru; Ganiraju C Manyam; Bradley Broom; Valerie Boige; Beatriz Perez-Villamil; Ted Laderas; Ramon Salazar; Joe W Gray; Douglas Hanahan; Josep Tabernero; Rene Bernards; Stephen H Friend; Pierre Laurent-Puig; Jan Paul Medema; Anguraj Sadanandam; Lodewyk Wessels; Mauro Delorenzi; Scott Kopetz; Louis Vermeulen; Sabine Tejpar
Journal:  Nat Med       Date:  2015-10-12       Impact factor: 53.440

10.  Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.

Authors:  Dvir Aran; Agnieszka P Looney; Leqian Liu; Esther Wu; Valerie Fong; Austin Hsu; Suzanna Chak; Ram P Naikawadi; Paul J Wolters; Adam R Abate; Atul J Butte; Mallar Bhattacharya
Journal:  Nat Immunol       Date:  2019-01-14       Impact factor: 25.606

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  91 in total

1.  Identification of an immune overdrive high-risk subpopulation with aberrant expression of FOXP3 and CTLA4 in colorectal cancer.

Authors:  Kaisa Cui; Surui Yao; Han Zhang; Mingyue Zhou; Bingxin Liu; Yulin Cao; Bojian Fei; Shenglin Huang; Zhaohui Huang
Journal:  Oncogene       Date:  2021-02-24       Impact factor: 9.867

2.  Loss of Optineurin Drives Cancer Immune Evasion via Palmitoylation-Dependent IFNGR1 Lysosomal Sorting and Degradation.

Authors:  Wan Du; Fang Hua; Xiong Li; Jian Zhang; Shasha Li; Weichao Wang; Jiajia Zhou; Weimin Wang; Peng Liao; Yijian Yan; Gaopeng Li; Shuang Wei; Sara Grove; Linda Vatan; Witold Zgodziński; Marek Majewski; Grzegorz Wallner; Haoyan Chen; Ilona Kryczek; Jing-Yuan Fang; Weiping Zou
Journal:  Cancer Discov       Date:  2021-02-24       Impact factor: 39.397

3.  Clonally expanded EOMES+ Tr1-like cells in primary and metastatic tumors are associated with disease progression.

Authors:  Raoul J P Bonnal; Grazisa Rossetti; Enrico Lugli; Marco De Simone; Paola Gruarin; Jolanda Brummelman; Lorenzo Drufuca; Marco Passaro; Ramona Bason; Federica Gervasoni; Giulia Della Chiara; Claudia D'Oria; Martina Martinovic; Serena Curti; Valeria Ranzani; Chiara Cordiglieri; Giorgia Alvisi; Emilia Maria Cristina Mazza; Stefania Oliveto; Ylenia Silvestri; Elena Carelli; Saveria Mazzara; Roberto Bosotti; Maria Lucia Sarnicola; Chiara Godano; Valeria Bevilacqua; Mariangela Lorenzo; Salvatore Siena; Emanuela Bonoldi; Andrea Sartore-Bianchi; Alessio Amatu; Giulia Veronesi; Pierluigi Novellis; Marco Alloisio; Alessandro Giani; Nicola Zucchini; Enrico Opocher; Andrea Pisani Ceretti; Nicolò Mariani; Stefano Biffo; Daniele Prati; Alberto Bardelli; Jens Geginat; Antonio Lanzavecchia; Sergio Abrignani; Massimiliano Pagani
Journal:  Nat Immunol       Date:  2021-05-20       Impact factor: 25.606

Review 4.  The inflammatory pathogenesis of colorectal cancer.

Authors:  Mark Schmitt; Florian R Greten
Journal:  Nat Rev Immunol       Date:  2021-04-28       Impact factor: 53.106

5.  Phenotypic plasticity underlies local invasion and distant metastasis in colon cancer.

Authors:  Andrea Sacchetti; Miriam Teeuwssen; Mathijs Verhagen; Rosalie Joosten; Tong Xu; Roberto Stabile; Berdine van der Steen; Martin M Watson; Alem Gusinac; Won Kyu Kim; Inge Ubink; Harmen Jg Van de Werken; Arianna Fumagalli; Madelon Paauwe; Jacco Van Rheenen; Owen J Sansom; Onno Kranenburg; Riccardo Fodde
Journal:  Elife       Date:  2021-05-26       Impact factor: 8.140

6.  Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients.

Authors:  Joseph C Devlin; Jordan Axelrad; Ashley M Hine; Shannon Chang; Suparna Sarkar; Jian-Da Lin; Kelly V Ruggles; David Hudesman; Ken Cadwell; P'ng Loke
Journal:  Gastroenterology       Date:  2021-02-05       Impact factor: 22.682

Review 7.  Current and Prospective Methods for Assessing Anti-Tumor Immunity in Colorectal Cancer.

Authors:  Yulia I Nussbaum; Yariswamy Manjunath; Kanve N Suvilesh; Wesley C Warren; Chi-Ren Shyu; Jussuf T Kaifi; Matthew A Ciorba; Jonathan B Mitchem
Journal:  Int J Mol Sci       Date:  2021-04-30       Impact factor: 5.923

8.  Stromal SOX2 Upregulation Promotes Tumorigenesis through the Generation of a SFRP1/2-Expressing Cancer-Associated Fibroblast Population.

Authors:  Hiroaki Kasashima; Angeles Duran; Anxo Martinez-Ordoñez; Yuki Nakanishi; Hiroto Kinoshita; Juan F Linares; Miguel Reina-Campos; Yotaro Kudo; Antoine L'Hermitte; Masakazu Yashiro; Masaichi Ohira; Fei Bao; Daniele V F Tauriello; Eduard Batlle; Maria T Diaz-Meco; Jorge Moscat
Journal:  Dev Cell       Date:  2020-11-17       Impact factor: 12.270

Review 9.  Genetic and biological hallmarks of colorectal cancer.

Authors:  Jiexi Li; Xingdi Ma; Deepavali Chakravarti; Shabnam Shalapour; Ronald A DePinho
Journal:  Genes Dev       Date:  2021-06       Impact factor: 11.361

10.  Single-cell RNA-seq reveals transcriptional landscape and intratumor heterogenicity in gallbladder cancer liver metastasis microenvironment.

Authors:  Yigang Zhang; Wen-Hua You; Xiangyu Li; Peng Wang; Bowen Sha; Yuan Liang; Jiannan Qiu; Jinren Zhou; Haoran Hu; Ling Lu
Journal:  Ann Transl Med       Date:  2021-05
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