| Literature DB >> 32450543 |
Jamie Toombs1, Lindsay Panther2, Loren Ornelas2, Chunyan Liu2, Emilda Gomez2, Raquel Martín-Ibáñez3, Simon R Cox4, Stuart J Ritchie4, Sarah E Harris4, Adele Taylor4, Paul Redmond4, Tom C Russ5, Lee Murphy6, James D Cooper7, Karen Burr7, Bhuvaneish T Selvaraj7, Cathy Browne8, Clive N Svendsen9, Sally A Cowley10, Ian J Deary4, Siddharthan Chandran7, Tara L Spires-Jones11, Dhruv Sareen12.
Abstract
Cognitive decline is among the most feared aspects of ageing. We have generated induced pluripotent stem cells (iPSCs) from 24 people from the Lothian Birth Cohort 1936, whose cognitive ability was tested in childhood and in older age. Peripheral blood mononuclear cells (PBMCs) were reprogrammed using non-integrating oriP/EBNA1 backbone plasmids expressing six iPSC reprogramming factors (OCT3/4 (POU5F1), SOX2, KLF4, L-Myc, shp53, Lin28, SV40LT). All lines demonstrated STR matched karyotype and pluripotency was validated by multiple methods. These iPSC lines are a valuable resource to study molecular mechanisms underlying individual differences in cognitive ageing and resilience to age-related neurodegenerative diseases.Entities:
Mesh:
Year: 2020 PMID: 32450543 PMCID: PMC7347008 DOI: 10.1016/j.scr.2020.101851
Source DB: PubMed Journal: Stem Cell Res ISSN: 1873-5061 Impact factor: 2.020
Summary of lines.
| iPSC line names | Abbreviation in figures | Gender | Age at collection | Ethnicity | Genotype of locus | Disease |
|---|---|---|---|---|---|---|
| EDi021-A | M | 78.8 | White Scottish | N/A | N/A | |
| EDi022-A | M | 79.22 | White Scottish | N/A | N/A | |
| EDi023-A | F | 79.1 | White Scottish | N/A | N/A | |
| EDi025-A | M | 78 | White Scottish | N/A | N/A | |
| EDi026-A | M | 79.45 | White Scottish | N/A | N/A | |
| EDi027-A | F | 79.65 | White Scottish | N/A | N/A | |
| EDi028-A | M | 79.1 | White Scottish | N/A | N/A | |
| EDi029-A | M | 80.13 | White Scottish | N/A | N/A | |
| EDi030-A | F | 78.98 | White Scottish | N/A | N/A | |
| EDi031-A | F | 78 | White Scottish | N/A | N/A | |
| EDi032-A | F | 79.29 | White Scottish | N/A | N/A | |
| EDi033-A | F | 78.67 | White Scottish | N/A | N/A | |
| EDi034-A | F | 78.68 | White Scottish | N/A | N/A | |
| EDi035-A | F | 78.79 | White Scottish | N/A | N/A | |
| EDi036-A | F | 79.22 | White Scottish | N/A | N/A | |
| EDi037-A | M | 79.1 | White Scottish | N/A | N/A | |
| EDi038-A | M | 79.19 | White Scottish | N/A | N/A | |
| EDi039-A | M | 78 | White Scottish | N/A | N/A | |
| EDi040-A | M | 79.67 | White Scottish | N/A | N/A | |
| EDi041-A | F | 80.13 | White Scottish | N/A | N/A | |
| EDi042-A | F | 79.42 | White Scottish | N/A | N/A | |
| EDi043-A | M | 80.26 | White Scottish | N/A | N/A | |
| EDi044-A | F | 79.85 | White Scottish | N/A | N/A | |
| EDi045-A | M | 80.32 | White Scottish | N/A | N/A |
Fig. 1Characterization for iPSC line EDi021-A.
Characterization and validation.
| Classification | Test | Result | Data |
|---|---|---|---|
| Morphology | Photography of phase contrast. | Normal. Colonies of small rounded cells with large nuclei. | |
| Phenotype | Qualitative analysis: Immunofluorescence, Alkaline Phosphatase Staining | OCT3/4+, NANOG+, SOX2+, TRA-1–60+, TRA-1–81+, SSEA4+, Alkaline Phosphatase+ | |
| Quantitative analysis: Pluritest | Pluripotency score ≥ 20 and novelty score ≤ 1.6 | ||
| Genotype | Karyotype (G-banding) | Normal XX and XY corresponding to gender ( | |
| Identity | STR analysis | 9 loci tested. 100% match for lines where original PBMCs were available (22/24 lines). | Available with the authors. |
| N/A | N/A | ||
| Mutation analysis (IF APPLICABLE) | Sequencing. | N/A | N/A |
| Southern Blot OR WGS. | N/A | N/A | |
| Microbiology and virology | Mycoplasma. | Negative. | |
| Differentiation potential | TaqMan® hPSC Scorecard™ Assay. | Endoderm, mesoderm, ectoderm negative at day 0, positive at day 14. | |
| Donor screening (OPTIONAL) | HIV 1 + 2 Hepatitis B, Hepatitis C. | N/A | N/A |
| Genotype additional info (OPTIONAL) | Blood group genotyping. | N/A | N/A |
| HLA tissue typing. | N/A | N/A |
Reagents details.
| Antibodies used for immunocytochemistry/flow-cytometry | |||
|---|---|---|---|
| Antibody | Dilution | Company Cat # and RRID | |
| Pluripotency Markers | SSEA4 (mlgG3) | 1:250 | Stemgent (cat. 09-0006, RRID: AB_1512169) |
| N/A | N/A | N/A | N/A |
| Secondary antibodies | Donkey anti-Mouse IgG AF488 | 1:500 | Life Technologies (cat. A-21202) |
| Primers | |||
| Target | Forward/Reverse primer (5′–3′) | ||
| Episomal Plasmids (qPCR) | Epstein-Barr virus nuclear antigen (EBNA) | GGTCCCGAGAATCCCCATCC/TTCATGGTCGCTGTCAGACAG | |
| N/A | N/A | N/A | |
| House-Keeping Genes (qPCR) | Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) | GTGGACCTGACCTGCCGTCT/ GGAGGAGTGGGTGTCGCTGT | |
| N/A | N/A | N/A | |
| N/A | N/A | N/A | |
| Unique stem cell lines identifier | EDi021-A |
| Alternative names of stem cell lines | N/A |
| Institution | Cedars-Sinai Medical Center, Los Angeles, USA |
| Contact information of distributor | USA distributer: Dhruv Sareen – |
| Type of cell lines | iPSC |
| Origin | Human |
| Cell Source | Peripheral Blood Mononuclear Cell |
| Clonality | Clonal |
| Method of reprogramming | Non-integrating episomal plasmids |
| Multiline rationale | 24 cell lines from a shared birth year/region cohort |
| Gene modification | NO |
| Type of modification | N/A |
| Associated disease | N/A |
| Gene/locus | N/A |
| Method of modification | N/A |
| Name of transgene or resistance | N/A |
| Inducible/constitutive system | N/A |
| Date archived/stock date | EDi021-A: 14/07/2017 |
| Cell line repository/bank | The following lines have been added to the Cedars-Sinai iPSC Core Repository which can be viewed by the public online at |
| Ethical approval | NHS Lothian Research Ethics Committee: 10/S1103/10. |