Literature DB >> 32448072

Gaussian process manifold interpolation for probabilistic atrial activation maps and uncertain conduction velocity.

Sam Coveney1, Cesare Corrado2, Caroline H Roney2, Daniel O'Hare2, Steven E Williams2, Mark D O'Neill2, Steven A Niederer2, Richard H Clayton1, Jeremy E Oakley3, Richard D Wilkinson3.   

Abstract

In patients with atrial fibrillation, local activation time (LAT) maps are routinely used for characterizing patient pathophysiology. The gradient of LAT maps can be used to calculate conduction velocity (CV), which directly relates to material conductivity and may provide an important measure of atrial substrate properties. Including uncertainty in CV calculations would help with interpreting the reliability of these measurements. Here, we build upon a recent insight into reduced-rank Gaussian processes (GPs) to perform probabilistic interpolation of uncertain LAT directly on human atrial manifolds. Our Gaussian process manifold interpolation (GPMI) method accounts for the topology of the atrium, and allows for calculation of statistics for predicted CV. We demonstrate our method on two clinical cases, and perform validation against a simulated ground truth. CV uncertainty depends on data density, wave propagation direction and CV magnitude. GPMI is suitable for probabilistic interpolation of other uncertain quantities on non-Euclidean manifolds. This article is part of the theme issue 'Uncertainty quantification in cardiac and cardiovascular modelling and simulation'.

Entities:  

Keywords:  Gaussian process; atrial fibrillation; cardiac conduction velocity; local activation time; manifold; probabilistic interpolation

Mesh:

Year:  2020        PMID: 32448072      PMCID: PMC7287339          DOI: 10.1098/rsta.2019.0345

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  12 in total

1.  Left atrial scarring and conduction velocity dynamics: Rate dependent conduction slowing predicts sites of localized reentrant atrial tachycardias.

Authors:  S Honarbakhsh; R J Schilling; M Orini; R Providencia; M Finlay; E Keating; P D Lambiase; A Chow; M J Earley; S Sporton; R J Hunter
Journal:  Int J Cardiol       Date:  2018-10-24       Impact factor: 4.164

2.  Probabilistic Interpolation of Uncertain Local Activation Times on Human Atrial Manifolds.

Authors:  Sam Coveney; Cesare Corrado; Caroline H Roney; Richard D Wilkinson; Jeremy E Oakley; Finn Lindgren; Steven E Williams; Mark D O'Neill; Steven A Niederer; Richard H Clayton
Journal:  IEEE Trans Biomed Eng       Date:  2019-04-09       Impact factor: 4.538

3.  A latent force model for describing electric propagation in deep brain stimulation: a simulation study.

Authors:  Pablo A Alvarado; Mauricio A Alvarez; Genaro Daza-Santacoloma; Alvaro Orozco; Germán Castellanos-Dominguez
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

4.  Regional conduction velocity calculation from clinical multichannel electrograms in human atria.

Authors:  Bhawna Verma; Tobias Oesterlein; Axel Loewe; Armin Luik; Claus Schmitt; Olaf Dössel
Journal:  Comput Biol Med       Date:  2017-11-26       Impact factor: 4.589

5.  Velocity characteristics of atrial fibrillation sources determined by electrographic flow mapping before and after catheter ablation.

Authors:  Barbara Bellmann; Marit Zettwitz; Tina Lin; Peter Ruppersberg; Selma Guttmann; Verena Tscholl; Patrick Nagel; Mattias Roser; Ulf Landmesser; Andreas Rillig
Journal:  Int J Cardiol       Date:  2019-02-11       Impact factor: 4.164

6.  Techniques for automated local activation time annotation and conduction velocity estimation in cardiac mapping.

Authors:  C D Cantwell; C H Roney; F S Ng; J H Siggers; S J Sherwin; N S Peters
Journal:  Comput Biol Med       Date:  2015-04-25       Impact factor: 4.589

7.  Patient-Specific Identification of Atrial Flutter Vulnerability-A Computational Approach to Reveal Latent Reentry Pathways.

Authors:  Axel Loewe; Emanuel Poremba; Tobias Oesterlein; Armin Luik; Claus Schmitt; Gunnar Seemann; Olaf Dössel
Journal:  Front Physiol       Date:  2019-01-14       Impact factor: 4.566

8.  A technique for measuring anisotropy in atrial conduction to estimate conduction velocity and atrial fibre direction.

Authors:  Caroline H Roney; John Whitaker; Iain Sim; Louisa O'Neill; Rahul K Mukherjee; Orod Razeghi; Edward J Vigmond; Matthew Wright; Mark D O'Neill; Steven E Williams; Steven A Niederer
Journal:  Comput Biol Med       Date:  2018-11-01       Impact factor: 4.589

9.  Computationally guided personalized targeted ablation of persistent atrial fibrillation.

Authors:  Patrick M Boyle; Tarek Zghaib; Sohail Zahid; Rheeda L Ali; Dongdong Deng; William H Franceschi; Joe B Hakim; Michael J Murphy; Adityo Prakosa; Stefan L Zimmerman; Hiroshi Ashikaga; Joseph E Marine; Aravindan Kolandaivelu; Saman Nazarian; David D Spragg; Hugh Calkins; Natalia A Trayanova
Journal:  Nat Biomed Eng       Date:  2019-08-19       Impact factor: 25.671

10.  A work flow to build and validate patient specific left atrium electrophysiology models from catheter measurements.

Authors:  Cesare Corrado; Steven Williams; Rashed Karim; Gernot Plank; Mark O'Neill; Steven Niederer
Journal:  Med Image Anal       Date:  2018-04-27       Impact factor: 8.545

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  9 in total

1.  The fickle heart: uncertainty quantification in cardiac and cardiovascular modelling and simulation.

Authors:  Gary R Mirams; Steven A Niederer; Richard H Clayton
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-05-25       Impact factor: 4.226

2.  Learning atrial fiber orientations and conductivity tensors from intracardiac maps using physics-informed neural networks.

Authors:  Thomas Grandits; Simone Pezzuto; Francisco Sahli Costabal; Paris Perdikaris; Thomas Pock; Gernot Plank; Rolf Krause
Journal:  Funct Imaging Model Heart       Date:  2021-06-18

Review 3.  Data integration for the numerical simulation of cardiac electrophysiology.

Authors:  Stefano Pagani; Luca Dede'; Andrea Manzoni; Alfio Quarteroni
Journal:  Pacing Clin Electrophysiol       Date:  2021-03-08       Impact factor: 1.976

Review 4.  Identifying Atrial Fibrillation Mechanisms for Personalized Medicine.

Authors:  Brototo Deb; Prasanth Ganesan; Ruibin Feng; Sanjiv M Narayan
Journal:  J Clin Med       Date:  2021-12-01       Impact factor: 4.241

Review 5.  Applications of multimodality imaging for left atrial catheter ablation.

Authors:  Caroline H Roney; Charles Sillett; John Whitaker; Jose Alonso Solis Lemus; Iain Sim; Irum Kotadia; Mark O'Neill; Steven E Williams; Steven A Niederer
Journal:  Eur Heart J Cardiovasc Imaging       Date:  2021-12-18       Impact factor: 6.875

Review 6.  Atrial conduction velocity mapping: clinical tools, algorithms and approaches for understanding the arrhythmogenic substrate.

Authors:  Sam Coveney; Chris Cantwell; Caroline Roney
Journal:  Med Biol Eng Comput       Date:  2022-07-22       Impact factor: 3.079

7.  Manifold Approximating Graph Interpolation of Cardiac Local Activation Time.

Authors:  Jennifer Hellar; Romain Cosentino; Mathews M John; Allison Post; Skylar Buchan; Mehdi Razavi; Behnaam Aazhang
Journal:  IEEE Trans Biomed Eng       Date:  2022-09-19       Impact factor: 4.756

8.  Calibrating cardiac electrophysiology models using latent Gaussian processes on atrial manifolds.

Authors:  Sam Coveney; Caroline H Roney; Cesare Corrado; Richard D Wilkinson; Jeremy E Oakley; Steven A Niederer; Richard H Clayton
Journal:  Sci Rep       Date:  2022-10-04       Impact factor: 4.996

9.  Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification.

Authors:  Lia Gander; Simone Pezzuto; Ali Gharaviri; Rolf Krause; Paris Perdikaris; Francisco Sahli Costabal
Journal:  Front Physiol       Date:  2022-03-07       Impact factor: 4.566

  9 in total

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