Literature DB >> 32448069

Sensitivity of a data-assimilation system for reconstructing three-dimensional cardiac electrical dynamics.

Matthew J Hoffman1, Elizabeth M Cherry2.   

Abstract

Modelling of cardiac electrical behaviour has led to important mechanistic insights, but important challenges, including uncertainty in model formulations and parameter values, make it difficult to obtain quantitatively accurate results. An alternative approach is combining models with observations from experiments to produce a data-informed reconstruction of system states over time. Here, we extend our earlier data-assimilation studies using an ensemble Kalman filter to reconstruct a three-dimensional time series of states with complex spatio-temporal dynamics using only surface observations of voltage. We consider the effects of several algorithmic and model parameters on the accuracy of reconstructions of known scroll-wave truth states using synthetic observations. In particular, we study the algorithm's sensitivity to parameters governing different parts of the process and its robustness to several model-error conditions. We find that the algorithm can achieve an acceptable level of error in many cases, with the weakest performance occurring for model-error cases and more extreme parameter regimes with more complex dynamics. Analysis of the poorest-performing cases indicates an initial decrease in error followed by an increase when the ensemble spread is reduced. Our results suggest avenues for further improvement through increasing ensemble spread by incorporating additive inflation or using a parameter or multi-model ensemble. This article is part of the theme issue 'Uncertainty quantification in cardiac and cardiovascular modelling and simulation'.

Keywords:  arrhythmia; model error; scroll waves; state reconstruction

Mesh:

Year:  2020        PMID: 32448069      PMCID: PMC7287341          DOI: 10.1098/rsta.2019.0388

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  52 in total

1.  Vortex dynamics in three-dimensional continuous myocardium with fiber rotation: Filament instability and fibrillation.

Authors:  Flavio Fenton; Alain Karma
Journal:  Chaos       Date:  1998-03       Impact factor: 3.642

2.  Parameter estimation in cardiac ionic models.

Authors:  Socrates Dokos; Nigel H Lovell
Journal:  Prog Biophys Mol Biol       Date:  2004 Jun-Jul       Impact factor: 3.667

Review 3.  Optical imaging of the heart.

Authors:  Igor R Efimov; Vladimir P Nikolski; Guy Salama
Journal:  Circ Res       Date:  2004-07-09       Impact factor: 17.367

4.  Model-based control of cardiac alternans in Purkinje fibers.

Authors:  Alejandro Garzón; Roman O Grigoriev; Flavio H Fenton
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-10-21

5.  Mechanism for Amplitude Alternans in Electrocardiograms and the Initiation of Spatiotemporal Chaos.

Authors:  Diandian Diana Chen; Richard A Gray; Ilija Uzelac; Conner Herndon; Flavio H Fenton
Journal:  Phys Rev Lett       Date:  2017-04-20       Impact factor: 9.161

6.  Minimal model for human ventricular action potentials in tissue.

Authors:  Alfonso Bueno-Orovio; Elizabeth M Cherry; Flavio H Fenton
Journal:  J Theor Biol       Date:  2008-04-08       Impact factor: 2.691

7.  Vortex filament dynamics in computational models of ventricular fibrillation in the heart.

Authors:  Richard H Clayton
Journal:  Chaos       Date:  2008-12       Impact factor: 3.642

8.  Effects of model error on cardiac electrical wave state reconstruction using data assimilation.

Authors:  Nicholas S LaVigne; Nathan Holt; Matthew J Hoffman; Elizabeth M Cherry
Journal:  Chaos       Date:  2017-09       Impact factor: 3.642

9.  Inter-subject variability in human atrial action potential in sinus rhythm versus chronic atrial fibrillation.

Authors:  Carlos Sánchez; Alfonso Bueno-Orovio; Erich Wettwer; Simone Loose; Jana Simon; Ursula Ravens; Esther Pueyo; Blanca Rodriguez
Journal:  PLoS One       Date:  2014-08-26       Impact factor: 3.240

10.  Rabbit-specific computational modelling of ventricular cell electrophysiology: Using populations of models to explore variability in the response to ischemia.

Authors:  Philip Gemmell; Kevin Burrage; Blanca Rodríguez; T Alexander Quinn
Journal:  Prog Biophys Mol Biol       Date:  2016-06-16       Impact factor: 3.667

View more
  3 in total

1.  The fickle heart: uncertainty quantification in cardiac and cardiovascular modelling and simulation.

Authors:  Gary R Mirams; Steven A Niederer; Richard H Clayton
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-05-25       Impact factor: 4.226

2.  Robust data assimilation with noise: Applications to cardiac dynamics.

Authors:  Christopher D Marcotte; Flavio H Fenton; Matthew J Hoffman; Elizabeth M Cherry
Journal:  Chaos       Date:  2021-01       Impact factor: 3.642

3.  EP-PINNs: Cardiac Electrophysiology Characterisation Using Physics-Informed Neural Networks.

Authors:  Clara Herrero Martin; Alon Oved; Rasheda A Chowdhury; Elisabeth Ullmann; Nicholas S Peters; Anil A Bharath; Marta Varela
Journal:  Front Cardiovasc Med       Date:  2022-02-03
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.