Literature DB >> 32445243

The orchard plot: Cultivating a forest plot for use in ecology, evolution, and beyond.

Shinichi Nakagawa1, Malgorzata Lagisz1, Rose E O'Dea1, Joanna Rutkowska2, Yefeng Yang1, Daniel W A Noble3, Alistair M Senior4.   

Abstract

"Classic" forest plots show the effect sizes from individual studies and the aggregate effect from a meta-analysis. However, in ecology and evolution, meta-analyses routinely contain over 100 effect sizes, making the classic forest plot of limited use. We surveyed 102 meta-analyses in ecology and evolution, finding that only 11% use the classic forest plot. Instead, most used a "forest-like plot," showing point estimates (with 95% confidence intervals [CIs]) from a series of subgroups or categories in a meta-regression. We propose a modification of the forest-like plot, which we name the "orchard plot." Orchard plots, in addition to showing overall mean effects and CIs from meta-analyses/regressions, also include 95% prediction intervals (PIs), and the individual effect sizes scaled by their precision. The PI allows the user and reader to see the range in which an effect size from a future study may be expected to fall. The PI, therefore, provides an intuitive interpretation of any heterogeneity in the data. Supplementing the PI, the inclusion of underlying effect sizes also allows the user to see any influential or outlying effect sizes. We showcase the orchard plot with example datasets from ecology and evolution, using the R package, orchard, including several functions for visualizing meta-analytic data using forest-plot derivatives. We consider the orchard plot as a variant on the classic forest plot, cultivated to the needs of meta-analysts in ecology and evolution. Hopefully, the orchard plot will prove fruitful for visualizing large collections of heterogeneous effect sizes regardless of the field of study.
© 2020 John Wiley & Sons, Ltd.

Keywords:  caterpillar plot; credibility interval; credible interval; evidence synthesis; graphical tool; meta-regression; summary forest plot

Year:  2020        PMID: 32445243     DOI: 10.1002/jrsm.1424

Source DB:  PubMed          Journal:  Res Synth Methods        ISSN: 1759-2879            Impact factor:   5.273


  14 in total

1.  How sperm competition shapes the evolution of testes and sperm: a meta-analysis.

Authors:  Stefan Lüpold; Raïssa A de Boer; Jonathan P Evans; Joseph L Tomkins; John L Fitzpatrick
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-10-19       Impact factor: 6.237

2.  Taste loss as a distinct symptom of COVID-19: a systematic review and meta-analysis.

Authors:  Mackenzie E Hannum; Riley J Koch; Vicente A Ramirez; Sarah S Marks; Aurora K Toskala; Riley D Herriman; Cailu Lin; Paule V Joseph; Danielle R Reed
Journal:  Chem Senses       Date:  2022-01-01       Impact factor: 3.160

3.  Meta-analysis on reporting practices as a source of heterogeneity in in vitro cancer research.

Authors:  Timo Sander; Joly Ghanawi; Emma Wilson; Sajjad Muhammad; Malcolm Macleod; Ulf Dietrich Kahlert
Journal:  BMJ Open Sci       Date:  2022-06-01

4.  Meta-analysis links dietary branched-chain amino acids to metabolic health in rodents.

Authors:  Samantha M Solon-Biet; Lucy Griffiths; Sophie Fosh; David G Le Couteur; Stephen J Simpson; Alistair M Senior
Journal:  BMC Biol       Date:  2022-01-14       Impact factor: 7.431

5.  Taste loss as a distinct symptom of COVID-19: A systematic review and meta-analysis.

Authors:  Mackenzie E Hannum; Riley J Koch; Vicente A Ramirez; Sarah S Marks; Aurora K Toskala; Riley D Herriman; Cailu Lin; Paule V Joseph; Danielle R Reed
Journal:  medRxiv       Date:  2021-10-09

6.  Comprehensive Analysis of the Oncogenic, Genomic Alteration, and Immunological Landscape of Cation-Chloride Cotransporters in Pan-Cancer.

Authors:  Jie Wang; Wangrui Liu; Wenhao Xu; Baofeng Yang; Mingzhu Cui; Zhen Li; Hailiang Zhang; Chuntao Jin; Huanzhou Xue; Jiaqiang Zhang
Journal:  Front Oncol       Date:  2022-03-17       Impact factor: 6.244

7.  Viviparous mothers impose stronger glucocorticoid-mediated maternal stress effects on their offspring than oviparous mothers.

Authors:  Kirsty J MacLeod; Geoffrey M While; Tobias Uller
Journal:  Ecol Evol       Date:  2021-11-29       Impact factor: 2.912

8.  Variation in the estimated prevalence of multimorbidity: systematic review and meta-analysis of 193 international studies.

Authors:  Iris Szu-Szu Ho; Amaya Azcoaga-Lorenzo; Ashley Akbari; Jim Davies; Peter Hodgins; Kamlesh Khunti; Umesh Kadam; Ronan Lyons; Colin McCowan; Stewart W Mercer; Krishnarajah Nirantharakumar; Bruce Guthrie
Journal:  BMJ Open       Date:  2022-04-29       Impact factor: 3.006

Review 9.  Cardiac consequences of intermittent hypoxia: a matter of dose? A systematic review and meta-analysis in rodents.

Authors:  Elise Belaidi; Charles Khouri; Olfa Harki; Sébastien Baillieul; Gilles Faury; Anne Briançon-Marjollet; Jean-Louis Pépin; Claire Arnaud
Journal:  Eur Respir Rev       Date:  2022-04-13

10.  Preferred reporting items for systematic reviews and meta-analyses in ecology and evolutionary biology: a PRISMA extension.

Authors:  Rose E O'Dea; Malgorzata Lagisz; Michael D Jennions; Julia Koricheva; Daniel W A Noble; Timothy H Parker; Jessica Gurevitch; Matthew J Page; Gavin Stewart; David Moher; Shinichi Nakagawa
Journal:  Biol Rev Camb Philos Soc       Date:  2021-05-07
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.