Literature DB >> 32441343

At Palmyra Atoll, the fish-community environmental DNA signal changes across habitats but not with tides.

Kevin D Lafferty1,2, Ana E Garcia-Vedrenne3, John P McLaughlin4, Jasmine N Childress4, Marisa F Morse4, Christopher L Jerde2.   

Abstract

At Palmyra Atoll, the environmental DNA (eDNA) signal on tidal sand flats was associated with fish biomass density and captured 98%-100% of the expected species diversity there. Although eDNA spilled over across habitats, species associated with reef habitat contributed more eDNA to reef sites than to sand-flat sites, and species associated with sand-flat habitat contributed more eDNA to sand-flat sites than to reef sites. Tides did not disrupt the sand-flat habitat signal. At least 25 samples give a coverage >97.5% at this diverse, tropical, marine system. Published 2020. This article is a U.S. Government work and is in the public domain in the USA.

Entities:  

Keywords:  Line Islands; Palmyra Atoll; coral reef; environmental DNA; intertidal; species richness

Mesh:

Substances:

Year:  2020        PMID: 32441343      PMCID: PMC9300262          DOI: 10.1111/jfb.14403

Source DB:  PubMed          Journal:  J Fish Biol        ISSN: 0022-1112            Impact factor:   2.504


  32 in total

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2.  Individual behaviors dominate the dynamics of an urban mountain lion population isolated by roads.

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4.  Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding.

Authors:  Nathan T Evans; Brett P Olds; Mark A Renshaw; Cameron R Turner; Yiyuan Li; Christopher L Jerde; Andrew R Mahon; Michael E Pfrender; Gary A Lamberti; David M Lodge
Journal:  Mol Ecol Resour       Date:  2015-06-18       Impact factor: 7.090

5.  Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment.

Authors:  Michael Stat; Megan J Huggett; Rachele Bernasconi; Joseph D DiBattista; Tina E Berry; Stephen J Newman; Euan S Harvey; Michael Bunce
Journal:  Sci Rep       Date:  2017-09-25       Impact factor: 4.379

6.  Persistence of marine fish environmental DNA and the influence of sunlight.

Authors:  Elizabeth A Andruszkiewicz; Lauren M Sassoubre; Alexandria B Boehm
Journal:  PLoS One       Date:  2017-09-15       Impact factor: 3.240

7.  Persistence of environmental DNA in marine systems.

Authors:  Rupert A Collins; Owen S Wangensteen; Eoin J O'Gorman; Stefano Mariani; David W Sims; Martin J Genner
Journal:  Commun Biol       Date:  2018-11-05

8.  Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA.

Authors:  Jesse A Port; James L O'Donnell; Ofelia C Romero-Maraccini; Paul R Leary; Steven Y Litvin; Kerry J Nickols; Kevan M Yamahara; Ryan P Kelly
Journal:  Mol Ecol       Date:  2015-12-24       Impact factor: 6.185

9.  Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan.

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Journal:  PLoS One       Date:  2016-03-02       Impact factor: 3.240

10.  Estimating species richness using environmental DNA.

Authors:  Brett P Olds; Christopher L Jerde; Mark A Renshaw; Yiyuan Li; Nathan T Evans; Cameron R Turner; Kristy Deiner; Andrew R Mahon; Michael A Brueseke; Patrick D Shirey; Michael E Pfrender; David M Lodge; Gary A Lamberti
Journal:  Ecol Evol       Date:  2016-05-30       Impact factor: 2.912

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  3 in total

1.  Environmental DNA from Marine Waters and Substrates: Protocols for Sampling and eDNA Extraction.

Authors:  Dominique A Cowart; Katherine R Murphy; C-H Christina Cheng
Journal:  Methods Mol Biol       Date:  2022

2.  Effects of forest cover on richness of threatened fish species in Japan.

Authors:  Edouard Lavergne; Manabu Kume; Hyojin Ahn; Yumi Henmi; Yuki Terashima; Feng Ye; Satoshi Kameyama; Yoshiaki Kai; Kohmei Kadowaki; Shiho Kobayashi; Yoh Yamashita; Akihide Kasai
Journal:  Conserv Biol       Date:  2021-12-02       Impact factor: 7.563

3.  What do you mean by false positive.

Authors:  John A Darling; Christopher L Jerde; Adam J Sepulveda
Journal:  Environ DNA       Date:  2020-11-25
  3 in total

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