Literature DB >> 32440369

GRIA: Graphical Regularization for Integrative Analysis.

Changgee Chang1, Jihwan Oh1, Qi Long1.   

Abstract

Integrative analysis jointly analyzes multiple data sets to overcome curse of dimensionality. It can detect important but weak signals by jointly selecting features for all data sets, but unfortunately the sets of important features are not always the same for all data sets. Variations which allows heterogeneous sparsity structure-a subset of data sets can have a zero coefficient for a selected feature-have been proposed, but it compromises the effect of integrative analysis recalling the problem of losing weak important signals. We propose a new integrative analysis approach which not only aggregates weak important signals well in homogeneity setting but also substantially alleviates the problem of losing weak important signals in heterogeneity setting. Our approach exploits a priori known graphical structure of features by forcing joint selection of adjacent features, and integrating such information over multiple data sets can increase the power while taking into account the heterogeneity across data sets. We confirm the problem of existing approaches and demonstrate the superiority of our method through a simulation study and an application to gene expression data from ADNI.

Entities:  

Year:  2020        PMID: 32440369      PMCID: PMC7241091          DOI: 10.1137/1.9781611976236.68

Source DB:  PubMed          Journal:  Proc SIAM Int Conf Data Min


  16 in total

1.  Scalable Bayesian variable selection for structured high-dimensional data.

Authors:  Changgee Chang; Suprateek Kundu; Qi Long
Journal:  Biometrics       Date:  2018-05-08       Impact factor: 2.571

2.  Integrative analysis and variable selection with multiple high-dimensional data sets.

Authors:  Shuangge Ma; Jian Huang; Xiao Song
Journal:  Biostatistics       Date:  2011-03-16       Impact factor: 5.899

3.  Meta-analysis based variable selection for gene expression data.

Authors:  Quefeng Li; Sijian Wang; Chiang-Ching Huang; Menggang Yu; Jun Shao
Journal:  Biometrics       Date:  2014-09-05       Impact factor: 2.571

4.  Integrative analysis of prognosis data on multiple cancer subtypes.

Authors:  Jin Liu; Jian Huang; Yawei Zhang; Qing Lan; Nathaniel Rothman; Tongzhang Zheng; Shuangge Ma
Journal:  Biometrics       Date:  2014-04-25       Impact factor: 2.571

5.  Sparse Regression Incorporating Graphical Structure among Predictors.

Authors:  Guan Yu; Yufeng Liu
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

6.  Integrative Analysis of "-Omics" Data Using Penalty Functions.

Authors:  Qing Zhao; Xingjie Shi; Jian Huang; Jin Liu; Yang Li; Shuangge Ma
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2015 Jan-Feb

7.  Integrative Analysis of Cancer Diagnosis Studies with Composite Penalization.

Authors:  Jin Liu; Jian Huang; Shuangge Ma
Journal:  Scand Stat Theory Appl       Date:  2014-03-01       Impact factor: 1.396

8.  Incorporating predictor network in penalized regression with application to microarray data.

Authors:  Wei Pan; Benhuai Xie; Xiaotong Shen
Journal:  Biometrics       Date:  2009-07-23       Impact factor: 2.571

9.  A General Iterative Shrinkage and Thresholding Algorithm for Non-convex Regularized Optimization Problems.

Authors:  Pinghua Gong; Changshui Zhang; Zhaosong Lu; Jianhua Z Huang; Jieping Ye
Journal:  JMLR Workshop Conf Proc       Date:  2013

10.  INCORPORATING BIOLOGICAL INFORMATION INTO LINEAR MODELS: A BAYESIAN APPROACH TO THE SELECTION OF PATHWAYS AND GENES.

Authors:  Francesco C Stingo; Yian A Chen; Mahlet G Tadesse; Marina Vannucci
Journal:  Ann Appl Stat       Date:  2011-09-01       Impact factor: 2.083

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