Literature DB >> 32437513

Molecular and Serological Assays for SARS-CoV-2: Insights from Genome and Clinical Characteristics.

Jiping Shi1,2, Dongsheng Han1,3, Runling Zhang1,3, Jinming Li1,3,4, Rui Zhang1,2,3,4.   

Abstract

BACKGROUND: The ongoing outbreak of the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has posed a challenge for worldwide public health. A reliable laboratory assay is essential both to confirm suspected patients and to exclude patients infected with other respiratory viruses, thereby facilitating the control of global outbreak scenarios. CONTENT: In this review, we focus on the genomic, transmission, and clinical characteristics of SARS-CoV-2, and comprehensively summarize the principles and related details of assays for SARS-CoV-2. We also explore the quality assurance measures for these assays.
SUMMARY: SARS-CoV-2 has some unique gene sequences and specific transmission and clinical features that can inform the conduct of molecular and serological assays in many aspects, including the design of primers, the selection of specimens, and testing strategies at different disease stages. Appropriate quality assurance measures for molecular and serological assays are needed to maintain testing proficiency. Because serological assays have the potential to identify later stages of the infection and to confirm highly suspected cases with negative molecular assay results, a combination of these two assays is needed to achieve a reliable capacity to detect SARS-CoV-2. © American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  SARS-CoV-2; application; molecular assays; quality assurance; serological assays

Mesh:

Substances:

Year:  2020        PMID: 32437513      PMCID: PMC7314174          DOI: 10.1093/clinchem/hvaa122

Source DB:  PubMed          Journal:  Clin Chem        ISSN: 0009-9147            Impact factor:   8.327


  14 in total

1.  Femtomolar SARS-CoV-2 Antigen Detection Using the Microbubbling Digital Assay with Smartphone Readout Enables Antigen Burden Quantitation and Tracking.

Authors:  Hui Chen; Zhao Li; Sheng Feng; Melissa Richard-Greenblatt; Emily Hutson; Stefen Andrianus; Laurel J Glaser; Kyle G Rodino; Jianing Qian; Dinesh Jayaraman; Ronald G Collman; Abigail Glascock; Frederic D Bushman; Jae Seung Lee; Sara Cherry; Alejandra Fausto; Susan R Weiss; Hyun Koo; Patricia M Corby; Alfonso Oceguera; Una O'Doherty; Alfred L Garfall; Dan T Vogl; Edward A Stadtmauer; Ping Wang
Journal:  Clin Chem       Date:  2021-12-30       Impact factor: 8.327

2.  SARS-CoV-2 antibody immunoassays in serial samples reveal earlier seroconversion in acutely ill COVID-19 patients developing ARDS.

Authors:  Marie-Luise Buchholtz; Florian M Arend; Peter Eichhorn; Michael Weigand; Alisa Kleinhempel; Kurt Häusler; Mathias Bruegel; Lesca M Holdt; Daniel Teupser
Journal:  PLoS One       Date:  2021-05-13       Impact factor: 3.240

3.  Botulinum toxin as an ultrasensitive reporter for bacterial and SARS-CoV-2 nucleic acid diagnostics.

Authors:  Fengge Song; Yuanyuan Shen; Yangdao Wei; Chunrong Yang; Xiaolin Ge; Aimin Wang; Chaoyang Li; Yi Wan; Jinghong Li
Journal:  Biosens Bioelectron       Date:  2020-12-31       Impact factor: 10.618

4.  Molecular diagnostic assays for COVID-19: an overview.

Authors:  Parham Habibzadeh; Mohammad Mofatteh; Mohammad Silawi; Saeid Ghavami; Mohammad Ali Faghihi
Journal:  Crit Rev Clin Lab Sci       Date:  2021-02-17       Impact factor: 6.250

5.  Current state of diagnostic, screening and surveillance testing methods for COVID-19 from an analytical chemistry point of view.

Authors:  Julia Martín; Noelia Tena; Agustin G Asuero
Journal:  Microchem J       Date:  2021-04-19       Impact factor: 4.821

6.  Relative synonymous codon usage of ORF1ab in SARS-CoV-2 and SARS-CoV.

Authors:  Gun Li; Liang Zhang; Ning Du
Journal:  Genes Genomics       Date:  2021-07-06       Impact factor: 1.839

7.  External Quality Assessment for Molecular Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Clinical Laboratories.

Authors:  Zhe Wang; Yuqing Chen; Jing Yang; Yanxi Han; Jiping Shi; Shaohua Zhan; Rongxue Peng; Rui Li; Runling Zhang; Jinming Li; Rui Zhang
Journal:  J Mol Diagn       Date:  2020-10-26       Impact factor: 5.568

8.  Femtomolar SARS-CoV-2 Antigen Detection Using the Microbubbling Digital Assay with Smartphone Readout Enables Antigen Burden Quantitation and Dynamics Tracking.

Authors:  Hui Chen; Zhao Li; Sheng Feng; Anni Wang; Melissa Richard-Greenblatt; Emily Hutson; Stefen Andrianus; Laurel J Glaser; Kyle G Rodino; Jianing Qian; Dinesh Jayaraman; Ronald G Collman; Abigail Glascock; Frederic D Bushman; Jae Seung Lee; Sara Cherry; Alejandra Fausto; Susan R Weiss; Hyun Koo; Patricia M Corby; Una O'Doherty; Alfred L Garfall; Dan T Vogl; Edward A Stadtmauer; Ping Wang
Journal:  medRxiv       Date:  2021-03-26

Review 9.  Considerations for diagnostic COVID-19 tests.

Authors:  Olivier Vandenberg; Delphine Martiny; Olivier Rochas; Alex van Belkum; Zisis Kozlakidis
Journal:  Nat Rev Microbiol       Date:  2020-10-14       Impact factor: 78.297

10.  COVID-19: from rapid genome sequencing to fast decisions.

Authors:  Ole Behrmann; Martin Spiegel
Journal:  Lancet Infect Dis       Date:  2020-07-14       Impact factor: 71.421

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