Literature DB >> 32432230

Disease Knowledge Transfer across Neurodegenerative Diseases.

Răzvan V Marinescu1,2, Marco Lorenzi3, Stefano B Blumberg1, Alexandra L Young1, Pere Planell-Morell1, Neil P Oxtoby1, Arman Eshaghi1,4, Keir X Yong5, Sebastian J Crutch5, Polina Golland2, Daniel C Alexander1.   

Abstract

We introduce Disease Knowledge Transfer (DKT), a novel technique for transferring biomarker information between related neurodegenerative diseases. DKT infers robust multimodal biomarker trajectories in rare neurodegenerative diseases even when only limited, unimodal data is available, by transferring information from larger multimodal datasets from common neurodegenerative diseases. DKT is a joint-disease generative model of biomarker progressions, which exploits biomarker relationships that are shared across diseases. Our proposed method allows, for the first time, the estimation of plausible multimodal biomarker trajectories in Posterior Cortical Atrophy (PCA), a rare neurodegenerative disease where only unimodal MRI data is available. For this we train DKT on a combined dataset containing subjects with two distinct diseases and sizes of data available: 1) a larger, multimodal typical AD (tAD) dataset from the TADPOLE Challenge, and 2) a smaller unimodal Posterior Cortical Atrophy (PCA) dataset from the Dementia Research Centre (DRC), for which only a limited number of Magnetic Resonance Imaging (MRI) scans are available. Although validation is challenging due to lack of data in PCA, we validate DKT on synthetic data and two patient datasets (TADPOLE and PCA cohorts), showing it can estimate the ground truth parameters in the simulation and predict unseen biomarkers on the two patient datasets. While we demonstrated DKT on Alzheimer's variants, we note DKT is generalisable to other forms of related neurodegenerative diseases. Source code for DKT is available online: https://github.com/mrazvan22/dkt.

Entities:  

Keywords:  Alzheimer’s Disease; Disease Progression Modelling; Manifold Learning; Posterior Cortical Atrophy; Transfer Learning

Year:  2019        PMID: 32432230      PMCID: PMC7235145          DOI: 10.1007/978-3-030-32245-8_95

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  8 in total

1.  Neurodegenerative diseases target large-scale human brain networks.

Authors:  William W Seeley; Richard K Crawford; Juan Zhou; Bruce L Miller; Michael D Greicius
Journal:  Neuron       Date:  2009-04-16       Impact factor: 17.173

2.  Domain Transfer Learning for MCI Conversion Prediction.

Authors:  Bo Cheng; Mingxia Liu; Daoqiang Zhang; Brent C Munsell; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2015-03-02       Impact factor: 4.538

3.  Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade.

Authors:  Clifford R Jack; David S Knopman; William J Jagust; Leslie M Shaw; Paul S Aisen; Michael W Weiner; Ronald C Petersen; John Q Trojanowski
Journal:  Lancet Neurol       Date:  2010-01       Impact factor: 44.182

4.  Cortical thickness and voxel-based morphometry in posterior cortical atrophy and typical Alzheimer's disease.

Authors:  Manja Lehmann; Sebastian J Crutch; Gerard R Ridgway; Basil H Ridha; Josephine Barnes; Elizabeth K Warrington; Martin N Rossor; Nick C Fox
Journal:  Neurobiol Aging       Date:  2009-09-25       Impact factor: 4.673

5.  A computational neurodegenerative disease progression score: method and results with the Alzheimer's disease Neuroimaging Initiative cohort.

Authors:  Bruno M Jedynak; Andrew Lang; Bo Liu; Elyse Katz; Yanwei Zhang; Bradley T Wyman; David Raunig; C Pierre Jedynak; Brian Caffo; Jerry L Prince
Journal:  Neuroimage       Date:  2012-08-03       Impact factor: 6.556

Review 6.  Posterior cortical atrophy.

Authors:  Sebastian J Crutch; Manja Lehmann; Jonathan M Schott; Gil D Rabinovici; Martin N Rossor; Nick C Fox
Journal:  Lancet Neurol       Date:  2012-02       Impact factor: 44.182

7.  Data-driven models of dominantly-inherited Alzheimer's disease progression.

Authors:  Neil P Oxtoby; Alexandra L Young; David M Cash; Tammie L S Benzinger; Anne M Fagan; John C Morris; Randall J Bateman; Nick C Fox; Jonathan M Schott; Daniel C Alexander
Journal:  Brain       Date:  2018-05-01       Impact factor: 13.501

8.  Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference.

Authors:  Alexandra L Young; Razvan V Marinescu; Neil P Oxtoby; Martina Bocchetta; Keir Yong; Nicholas C Firth; David M Cash; David L Thomas; Katrina M Dick; Jorge Cardoso; John van Swieten; Barbara Borroni; Daniela Galimberti; Mario Masellis; Maria Carmela Tartaglia; James B Rowe; Caroline Graff; Fabrizio Tagliavini; Giovanni B Frisoni; Robert Laforce; Elizabeth Finger; Alexandre de Mendonça; Sandro Sorbi; Jason D Warren; Sebastian Crutch; Nick C Fox; Sebastien Ourselin; Jonathan M Schott; Jonathan D Rohrer; Daniel C Alexander
Journal:  Nat Commun       Date:  2018-10-15       Impact factor: 14.919

  8 in total
  1 in total

1.  CNN-based severity prediction of neurodegenerative diseases using gait data.

Authors:  Çağatay Berke Erdaş; Emre Sümer; Seda Kibaroğlu
Journal:  Digit Health       Date:  2022-01-27
  1 in total

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