| Literature DB >> 32431923 |
Palanivelu Nithya1,2, Subbiah Govindarajan1, Jim Simpson3.
Abstract
The title centrosymmetric NiII complex, [Ni(NCS)2(C15H22N2O2)2], crystallizes with one half mol-ecule in the asymmetric unit of the monoclinic unit cell. The complex adopts an octa-hedral coordination geometry with two mutually trans benzyl-2-(heptan-4-yl-idene)hydrazine-1-carboxyl-ate ligands in the equatorial plane with the axial positions occupied by N-bound thio-cyanato ligands. The overall conformation of the mol-ecule is also affected by two, inversion-related, intra-molecular C-H⋯O hydrogen bonds. The crystal structure features N-H⋯S, C-H⋯S and C-H⋯N hydrogen bonds together with C-H⋯π contacts that stack the complexes along the b-axis direction. The packing was further explored by Hirshfeld surface analysis. The thermal properties of the complex were also investigated by simultaneous TGA-DTA analyses. © Nithya et al. 2020.Entities:
Keywords: Hirshfeld surface analysis; NiII complex; benzyl-2-(heptan-4-ylidene)hydrazine-1-carboxylate ligand; crystal structure; simultaneous TGA–DTA analyses; thiocyanato ligands
Year: 2020 PMID: 32431923 PMCID: PMC7199269 DOI: 10.1107/S2056989020004260
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of 1 showing the atom numbering with ellipsoids drawn at the 50% probability level. Labelled atoms are related to unlabelled atoms by the symmetry operation −x + 1, −y, −z + 2. Intramolecular hydrogen bonds are shown as dashed black lines.
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C3–C8 phenyl ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.824 (17) | 2.507 (17) | 3.2830 (12) | 157.3 (16) |
| C8—H8⋯S1i | 0.95 | 2.94 | 3.7080 (16) | 139 |
| C10—H10 | 0.99 | 3.00 | 3.9059 (14) | 154 |
| C10—H10 | 0.99 | 2.94 | 3.8464 (15) | 153 |
| C13—H13 | 0.99 | 2.35 | 3.1783 (18) | 141 |
| C2—H2 | 0.99 | 2.72 | 3.6041 (17) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2Chains of molecules of 1 along the bc diagonal. Hydrogen bonds are drawn as dashed cyan lines.
Figure 3Chains of inversion dimers of 1 along b.
Figure 4Chains of molecules of 1 along a. C—H⋯π contacts are drawn as dashed magenta lines with the centroids (Cg) of the C3–C8 rings shown as magenta spheres.
Figure 5Overall packing of 1 viewed along the b-axis direction.
Figure 6Hirshfeld surfaces for opposite faces (a) and (b) of 1 mapped over d norm in the range −0.3928 to 2.1718 a.u. Cg3 is the centroid of the C3–C8 phenyl ring.
Figure 7A full two-dimensional fingerprint plot for 1, (a), together with separate principal contact types for the molecule (b)–(f). These were found to be H⋯H, H⋯C/C⋯H, H⋯S/S⋯H, H⋯N/N⋯H and H⋯O/O⋯H contacts.
Percentage contributions to the Hirshfeld surface for 1
| Contacts | Included surface area % |
|---|---|
| H⋯H | 55.5 |
| H⋯C/C⋯H | 18.8 |
| H⋯S/S⋯H | 16.6 |
| H⋯N/N⋯H | 4.3 |
| H⋯O/O⋯H | 3.2 |
| O⋯C/C⋯O | 0.7 |
| O⋯S/S⋯O | 0.6 |
Experimental details
| Crystal data | |
| Chemical formula | [Ni(NCS)2(C15H22N2O2)2] |
|
| 699.56 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 12.6406 (3), 10.1280 (3), 15.7458 (4) |
| β (°) | 108.647 (3) |
|
| 1910.02 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.66 |
| Crystal size (mm) | 0.39 × 0.24 × 0.16 |
| Data collection | |
| Diffractometer | Agilent SuperNova, Dual, Cu at zero, Atlas |
| Absorption correction | Multi-scan ( |
|
| 0.772, 1.000 |
| No. of measured, independent and observed [ | 12439, 4575, 3961 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.695 |
| Refinement | |
|
| 0.031, 0.073, 1.05 |
| No. of reflections | 4575 |
| No. of parameters | 210 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.33, −0.39 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/1 (Sheldrick, 2015b ▸), TITAN (Hunter & Simpson, 1999 ▸), Mercury (Macrae et al., 2020 ▸), enCIFer (Allen et al., 2004 ▸), PLATON (Spek, 2020 ▸) and publCIF (Westrip 2010 ▸).
Figure 8Simultaneous TGA–DTA analyses for 1. The heavy (darker) lines show the TGA plot with the DTA behaviour shown by the lighter curve.
| [Ni(NCS)2(C15H22N2O2)2] | |
| Monoclinic, | Mo |
| Cell parameters from 6613 reflections | |
| θ = 3.6–29.2° | |
| µ = 0.66 mm−1 | |
| β = 108.647 (3)° | |
| Rectangular block, blue | |
| 0.39 × 0.24 × 0.16 mm |
| Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer | 4575 independent reflections |
| Radiation source: Agilent SuperNova (Mo) X-ray Source | 3961 reflections with |
| Detector resolution: 5.1725 pixels mm-1 | |
| ω scans | θmax = 29.6°, θmin = 3.2° |
| Absorption correction: multi-scan (CrysAlisPro; Agilent, 2014) | |
| 12439 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4575 reflections | Δρmax = 0.33 e Å−3 |
| 210 parameters | Δρmin = −0.38 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. One reflection with Fo >>> Fc was omitted from the final refinement cycles. |
| Ni1 | 0.500000 | 0.000000 | 1.000000 | 0.01311 (7) | |
| O1 | 0.34390 (7) | 0.04585 (10) | 1.01346 (6) | 0.0166 (2) | |
| C1 | 0.33197 (11) | −0.01165 (14) | 1.07823 (9) | 0.0159 (3) | |
| O2 | 0.25009 (8) | 0.01215 (11) | 1.11267 (7) | 0.0210 (2) | |
| C2 | 0.16396 (11) | 0.10284 (16) | 1.06322 (10) | 0.0208 (3) | |
| H2A | 0.137728 | 0.078992 | 0.998872 | 0.025* | |
| H2B | 0.193675 | 0.194018 | 1.069115 | 0.025* | |
| C3 | 0.06895 (11) | 0.09413 (16) | 1.10129 (10) | 0.0207 (3) | |
| C4 | −0.00906 (14) | 0.19554 (19) | 1.08242 (13) | 0.0357 (4) | |
| H4 | −0.000374 | 0.268997 | 1.047719 | 0.043* | |
| C5 | −0.09990 (15) | 0.1901 (2) | 1.11410 (14) | 0.0428 (5) | |
| H5 | −0.153094 | 0.259680 | 1.100762 | 0.051* | |
| C6 | −0.11294 (13) | 0.0844 (2) | 1.16464 (12) | 0.0338 (4) | |
| H6 | −0.174835 | 0.081002 | 1.186420 | 0.041* | |
| C7 | −0.03610 (13) | −0.01634 (18) | 1.18350 (11) | 0.0277 (4) | |
| H7 | −0.044911 | −0.089213 | 1.218626 | 0.033* | |
| C8 | 0.05482 (12) | −0.01236 (16) | 1.15143 (10) | 0.0226 (3) | |
| H8 | 0.107027 | −0.082965 | 1.164090 | 0.027* | |
| N2 | 0.39863 (10) | −0.10797 (13) | 1.12383 (8) | 0.0187 (3) | |
| H2N | 0.3879 (13) | −0.1414 (17) | 1.1681 (12) | 0.022* | |
| N1 | 0.48528 (9) | −0.14754 (12) | 1.09226 (8) | 0.0156 (2) | |
| C9 | 0.52823 (11) | −0.26137 (15) | 1.11779 (9) | 0.0170 (3) | |
| C10 | 0.48835 (12) | −0.35599 (15) | 1.17505 (10) | 0.0194 (3) | |
| H10A | 0.470958 | −0.306629 | 1.223216 | 0.023* | |
| H10B | 0.548117 | −0.420395 | 1.203426 | 0.023* | |
| C11 | 0.38364 (14) | −0.42957 (18) | 1.11758 (11) | 0.0308 (4) | |
| H11A | 0.321679 | −0.365719 | 1.094963 | 0.037* | |
| H11B | 0.398761 | −0.469318 | 1.065186 | 0.037* | |
| C12 | 0.34816 (16) | −0.53771 (19) | 1.17007 (13) | 0.0375 (4) | |
| H12A | 0.406779 | −0.605036 | 1.188334 | 0.056* | |
| H12B | 0.278687 | −0.578254 | 1.132223 | 0.056* | |
| H12C | 0.336205 | −0.499402 | 1.223428 | 0.056* | |
| C13 | 0.62074 (12) | −0.30822 (16) | 1.08489 (10) | 0.0209 (3) | |
| H13A | 0.618840 | −0.257813 | 1.030547 | 0.025* | |
| H13B | 0.608894 | −0.402577 | 1.068126 | 0.025* | |
| C14 | 0.73513 (12) | −0.29144 (18) | 1.15569 (12) | 0.0290 (4) | |
| H14A | 0.734359 | −0.332963 | 1.212408 | 0.035* | |
| H14B | 0.751004 | −0.196209 | 1.167194 | 0.035* | |
| C15 | 0.82738 (14) | −0.3542 (2) | 1.12562 (14) | 0.0391 (5) | |
| H15A | 0.814383 | −0.449445 | 1.117866 | 0.059* | |
| H15B | 0.899948 | −0.338260 | 1.171121 | 0.059* | |
| H15C | 0.826912 | −0.314947 | 1.068597 | 0.059* | |
| N3 | 0.57102 (10) | 0.12673 (13) | 1.09988 (8) | 0.0189 (3) | |
| C16 | 0.61615 (11) | 0.21720 (15) | 1.14054 (9) | 0.0162 (3) | |
| S1 | 0.68148 (3) | 0.34303 (4) | 1.19984 (3) | 0.02219 (10) |
| Ni1 | 0.01222 (12) | 0.01537 (14) | 0.01307 (13) | −0.00022 (9) | 0.00589 (10) | −0.00050 (10) |
| O1 | 0.0141 (4) | 0.0200 (5) | 0.0175 (5) | 0.0017 (4) | 0.0076 (4) | 0.0030 (4) |
| C1 | 0.0132 (6) | 0.0193 (8) | 0.0164 (7) | −0.0004 (5) | 0.0066 (5) | −0.0015 (6) |
| O2 | 0.0172 (5) | 0.0278 (6) | 0.0224 (5) | 0.0092 (4) | 0.0126 (4) | 0.0091 (4) |
| C2 | 0.0168 (7) | 0.0233 (8) | 0.0227 (7) | 0.0063 (6) | 0.0069 (6) | 0.0052 (6) |
| C3 | 0.0163 (7) | 0.0258 (9) | 0.0207 (7) | 0.0031 (6) | 0.0071 (6) | −0.0024 (6) |
| C4 | 0.0322 (9) | 0.0337 (11) | 0.0487 (11) | 0.0130 (8) | 0.0233 (8) | 0.0116 (9) |
| C5 | 0.0314 (9) | 0.0460 (12) | 0.0597 (13) | 0.0201 (9) | 0.0269 (9) | 0.0074 (10) |
| C6 | 0.0204 (8) | 0.0495 (12) | 0.0376 (9) | 0.0033 (8) | 0.0177 (7) | −0.0030 (9) |
| C7 | 0.0189 (7) | 0.0404 (11) | 0.0251 (8) | −0.0020 (7) | 0.0087 (7) | 0.0017 (7) |
| C8 | 0.0147 (7) | 0.0306 (9) | 0.0229 (8) | 0.0023 (6) | 0.0066 (6) | 0.0004 (7) |
| N2 | 0.0181 (6) | 0.0228 (7) | 0.0201 (6) | 0.0053 (5) | 0.0128 (5) | 0.0060 (5) |
| N1 | 0.0134 (5) | 0.0196 (7) | 0.0161 (6) | 0.0022 (5) | 0.0081 (5) | −0.0003 (5) |
| C9 | 0.0167 (6) | 0.0184 (8) | 0.0164 (6) | −0.0002 (6) | 0.0060 (5) | −0.0006 (6) |
| C10 | 0.0228 (7) | 0.0173 (8) | 0.0209 (7) | 0.0022 (6) | 0.0109 (6) | 0.0010 (6) |
| C11 | 0.0372 (9) | 0.0278 (10) | 0.0280 (8) | −0.0102 (7) | 0.0110 (7) | −0.0019 (7) |
| C12 | 0.0428 (10) | 0.0303 (10) | 0.0407 (10) | −0.0142 (8) | 0.0154 (9) | −0.0007 (8) |
| C13 | 0.0241 (7) | 0.0185 (8) | 0.0244 (7) | 0.0047 (6) | 0.0139 (6) | 0.0030 (6) |
| C14 | 0.0216 (7) | 0.0288 (10) | 0.0385 (9) | 0.0033 (7) | 0.0124 (7) | 0.0056 (8) |
| C15 | 0.0280 (8) | 0.0395 (11) | 0.0571 (12) | 0.0144 (8) | 0.0237 (9) | 0.0214 (9) |
| N3 | 0.0196 (6) | 0.0213 (7) | 0.0167 (6) | −0.0013 (5) | 0.0072 (5) | −0.0016 (5) |
| C16 | 0.0157 (6) | 0.0195 (8) | 0.0162 (6) | 0.0031 (6) | 0.0090 (5) | 0.0028 (6) |
| S1 | 0.02393 (19) | 0.0196 (2) | 0.0279 (2) | −0.00579 (15) | 0.01512 (16) | −0.00852 (16) |
| Ni1—N3 | 2.0059 (13) | N2—H2N | 0.824 (17) |
| Ni1—N3i | 2.0059 (12) | N1—C9 | 1.2829 (19) |
| Ni1—O1i | 2.1028 (9) | C9—C13 | 1.4994 (18) |
| Ni1—O1 | 2.1028 (9) | C9—C10 | 1.5086 (19) |
| Ni1—N1i | 2.1332 (12) | C10—C11 | 1.536 (2) |
| Ni1—N1 | 2.1332 (12) | C10—H10A | 0.9900 |
| O1—C1 | 1.2249 (17) | C10—H10B | 0.9900 |
| C1—O2 | 1.3350 (15) | C11—C12 | 1.523 (2) |
| C1—N2 | 1.3380 (19) | C11—H11A | 0.9900 |
| O2—C2 | 1.4467 (17) | C11—H11B | 0.9900 |
| C2—C3 | 1.5066 (18) | C12—H12A | 0.9800 |
| C2—H2A | 0.9900 | C12—H12B | 0.9800 |
| C2—H2B | 0.9900 | C12—H12C | 0.9800 |
| C3—C8 | 1.381 (2) | C13—C14 | 1.527 (2) |
| C3—C4 | 1.389 (2) | C13—H13A | 0.9900 |
| C4—C5 | 1.392 (2) | C13—H13B | 0.9900 |
| C4—H4 | 0.9500 | C14—C15 | 1.530 (2) |
| C5—C6 | 1.375 (3) | C14—H14A | 0.9900 |
| C5—H5 | 0.9500 | C14—H14B | 0.9900 |
| C6—C7 | 1.374 (2) | C15—H15A | 0.9800 |
| C6—H6 | 0.9500 | C15—H15B | 0.9800 |
| C7—C8 | 1.396 (2) | C15—H15C | 0.9800 |
| C7—H7 | 0.9500 | N3—C16 | 1.1582 (19) |
| C8—H8 | 0.9500 | C16—S1 | 1.6386 (16) |
| N2—N1 | 1.3985 (15) | ||
| N3—Ni1—N3i | 180.00 (7) | N1—N2—H2N | 122.8 (12) |
| N3—Ni1—O1i | 91.21 (4) | C9—N1—N2 | 116.57 (11) |
| N3i—Ni1—O1i | 88.79 (4) | C9—N1—Ni1 | 136.26 (9) |
| N3—Ni1—O1 | 88.79 (4) | N2—N1—Ni1 | 106.86 (8) |
| N3i—Ni1—O1 | 91.21 (4) | N1—C9—C13 | 118.34 (12) |
| O1i—Ni1—O1 | 180.0 | N1—C9—C10 | 124.70 (12) |
| N3—Ni1—N1i | 88.34 (5) | C13—C9—C10 | 116.88 (13) |
| N3i—Ni1—N1i | 91.66 (5) | C9—C10—C11 | 110.23 (12) |
| O1i—Ni1—N1i | 78.29 (4) | C9—C10—H10A | 109.6 |
| O1—Ni1—N1i | 101.71 (4) | C11—C10—H10A | 109.6 |
| N3—Ni1—N1 | 91.66 (5) | C9—C10—H10B | 109.6 |
| N3i—Ni1—N1 | 88.34 (5) | C11—C10—H10B | 109.6 |
| O1i—Ni1—N1 | 101.71 (4) | H10A—C10—H10B | 108.1 |
| O1—Ni1—N1 | 78.29 (4) | C12—C11—C10 | 112.14 (14) |
| N1i—Ni1—N1 | 180.0 | C12—C11—H11A | 109.2 |
| C1—O1—Ni1 | 110.38 (9) | C10—C11—H11A | 109.2 |
| O1—C1—O2 | 124.76 (13) | C12—C11—H11B | 109.2 |
| O1—C1—N2 | 124.70 (12) | C10—C11—H11B | 109.2 |
| O2—C1—N2 | 110.53 (12) | H11A—C11—H11B | 107.9 |
| C1—O2—C2 | 116.34 (11) | C11—C12—H12A | 109.5 |
| O2—C2—C3 | 107.88 (12) | C11—C12—H12B | 109.5 |
| O2—C2—H2A | 110.1 | H12A—C12—H12B | 109.5 |
| C3—C2—H2A | 110.1 | C11—C12—H12C | 109.5 |
| O2—C2—H2B | 110.1 | H12A—C12—H12C | 109.5 |
| C3—C2—H2B | 110.1 | H12B—C12—H12C | 109.5 |
| H2A—C2—H2B | 108.4 | C9—C13—C14 | 111.94 (12) |
| C8—C3—C4 | 119.14 (13) | C9—C13—H13A | 109.2 |
| C8—C3—C2 | 122.57 (13) | C14—C13—H13A | 109.2 |
| C4—C3—C2 | 118.26 (14) | C9—C13—H13B | 109.2 |
| C3—C4—C5 | 120.33 (17) | C14—C13—H13B | 109.2 |
| C3—C4—H4 | 119.8 | H13A—C13—H13B | 107.9 |
| C5—C4—H4 | 119.8 | C13—C14—C15 | 111.43 (15) |
| C6—C5—C4 | 120.24 (16) | C13—C14—H14A | 109.3 |
| C6—C5—H5 | 119.9 | C15—C14—H14A | 109.3 |
| C4—C5—H5 | 119.9 | C13—C14—H14B | 109.3 |
| C7—C6—C5 | 119.73 (14) | C15—C14—H14B | 109.3 |
| C7—C6—H6 | 120.1 | H14A—C14—H14B | 108.0 |
| C5—C6—H6 | 120.1 | C14—C15—H15A | 109.5 |
| C6—C7—C8 | 120.48 (16) | C14—C15—H15B | 109.5 |
| C6—C7—H7 | 119.8 | H15A—C15—H15B | 109.5 |
| C8—C7—H7 | 119.8 | C14—C15—H15C | 109.5 |
| C3—C8—C7 | 120.07 (15) | H15A—C15—H15C | 109.5 |
| C3—C8—H8 | 120.0 | H15B—C15—H15C | 109.5 |
| C7—C8—H8 | 120.0 | C16—N3—Ni1 | 163.23 (11) |
| C1—N2—N1 | 116.66 (11) | N3—C16—S1 | 178.75 (14) |
| C1—N2—H2N | 120.5 (12) | ||
| Ni1—O1—C1—O2 | 169.27 (11) | O1—C1—N2—N1 | −2.4 (2) |
| Ni1—O1—C1—N2 | −11.39 (18) | O2—C1—N2—N1 | 177.07 (12) |
| O1—C1—O2—C2 | 6.7 (2) | C1—N2—N1—C9 | −160.49 (13) |
| N2—C1—O2—C2 | −172.72 (12) | C1—N2—N1—Ni1 | 14.19 (15) |
| C1—O2—C2—C3 | 168.23 (12) | N2—N1—C9—C13 | 179.49 (12) |
| O2—C2—C3—C8 | −19.5 (2) | Ni1—N1—C9—C13 | 6.9 (2) |
| O2—C2—C3—C4 | 162.63 (15) | N2—N1—C9—C10 | 3.0 (2) |
| C8—C3—C4—C5 | 0.4 (3) | Ni1—N1—C9—C10 | −169.67 (10) |
| C2—C3—C4—C5 | 178.27 (17) | N1—C9—C10—C11 | 79.24 (18) |
| C3—C4—C5—C6 | 0.2 (3) | C13—C9—C10—C11 | −97.34 (15) |
| C4—C5—C6—C7 | −0.3 (3) | C9—C10—C11—C12 | 173.28 (14) |
| C5—C6—C7—C8 | −0.3 (3) | N1—C9—C13—C14 | 101.19 (16) |
| C4—C3—C8—C7 | −0.9 (2) | C10—C9—C13—C14 | −82.00 (17) |
| C2—C3—C8—C7 | −178.70 (15) | C9—C13—C14—C15 | 173.33 (13) |
| C6—C7—C8—C3 | 0.8 (3) |
| H··· | ||||
| N2—H2 | 0.824 (17) | 2.507 (17) | 3.2830 (12) | 157.3 (16) |
| C8—H8···S1ii | 0.95 | 2.94 | 3.7080 (16) | 139 |
| C10—H10 | 0.99 | 3.00 | 3.9059 (14) | 154 |
| C10—H10 | 0.99 | 2.94 | 3.8464 (15) | 153 |
| C13—H13 | 0.99 | 2.35 | 3.1783 (18) | 141 |
| C2—H2 | 0.99 | 2.72 | 3.6041 (17) | 149 |