| Literature DB >> 32428270 |
Ecaterina Burevschi1, Elena R Alonso1, M Eugenia Sanz1.
Abstract
Non-covalent interactions between molecules determine molecular recognition and the outcome of chemical and biological processes. Characterising how non-covalent interactions influence binding preferences is of crucial importance in advancing our understanding of these events. Here, we analyse the interactions involved in smell and specifically the effect of changing the balance between hydrogen-bonding and dispersion interactions by examining the complexes of the common odorant fenchone with phenol and benzene, mimics of tyrosine and phenylalanine residues, respectively. Using rotational spectroscopy and quantum chemistry, two isomers of each complex have been identified. Our results show that the increased weight of dispersion interactions in these complexes changes the preferred binding site in fenchone and sets the basis for a better understanding of the effect of different residues in molecular recognition and binding events.Entities:
Keywords: density functional calculations; molecular recognition; noncovalent interactions; odorants; rotational spectroscopy
Year: 2020 PMID: 32428270 PMCID: PMC7497235 DOI: 10.1002/chem.202001713
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236
B3LYP‐D3BJ and MP2 spectroscopic parameters and relative energies for the five isomers of the fenchone–phenol complex.
|
Isomer |
|
|
|
|
| |||||
|---|---|---|---|---|---|---|---|---|---|---|
|
| ||||||||||
|
|
B3LYP‐ D3BJ[a] |
MP2 |
B3LYP‐ D3BJ |
MP2 |
B3LYP‐ D3BJ |
MP2[b] |
B3LYP‐ D3BJ |
MP2 |
B3LYP‐ D3BJ |
MP2 |
|
|
698.7 |
677.9 |
903.8 |
853.7 |
852.5 |
– |
716.2 |
679.3 |
854.9 |
742.4 |
|
|
294.7 |
325.0 |
212.2 |
229.0 |
211.2 |
– |
266.6 |
299.5 |
215.4 |
278.5 |
|
|
279.2 |
314.4 |
200.4 |
215.4 |
206.6 |
– |
250.3 |
282.9 |
206.6 |
268.3 |
|
|
−3.3 |
−2.8 |
−4.5 |
3.9 |
4.6 |
– |
−4.0 |
−3.3 |
4.7 |
3.4 |
|
|
1.5 |
−2.0 |
0.0 |
0.2 |
0.0 |
– |
−1.4 |
−1.7 |
0.0 |
0.7 |
|
|
−2.5 |
2.1 |
−2.4 |
2.5 |
2.3 |
– |
−2.4 |
−2.2 |
−2.6 |
−2.9 |
|
Δ |
0 |
0 |
200 |
918 |
233 |
– |
253 |
570 |
213 |
774 |
|
Δ |
0 |
0 |
140 |
782 |
161 |
– |
206 |
456 |
382 |
673 |
|
|
46.8 |
35.4 |
45.3 |
33.3 |
45.0 |
– |
44.3 |
33.0 |
42.8 |
31.6 |
|
|
|
|
|
|
| |||||
[a] All calculations were performed using the 6‐311++G(d,p) basis set. [b] Isomer 3 converges to isomer 4 at the MP2 level of theory. [c] A, B and C are the rotational constants. μ, μ and μ are the electric dipole moment components. [d] Relative electronic energies. [e] Relative electronic energies including the zero‐point correction. [f] Dissociation energies.
Experimental spectroscopic constants of the observed isomers of fenchone–phenol.
|
|
FPHE1 |
FPHE2 |
|---|---|---|
|
|
698.07125(67)[b] |
910.23133(58) |
|
|
287.602617(99) |
206.090858(73) |
|
|
272.41326(11) |
192.996827(81) |
|
Δ |
0.17753(35) |
0.02927(16) |
|
Δ |
−0.3026(29) |
−0.0643(23) |
|
Δ |
0.306(66) |
0.282(36) |
|
|
−0.01153(21) |
– |
|
|
0.236(25) |
– |
|
|
s/m/m |
s/–/m |
|
|
5.5 |
6.4 |
|
|
169 |
172 |
[a] A, B and C are the rotational constants. Δ, Δ, Δ, δ and δ are the quartic centrifugal distortion constants. [b] Standard error in parentheses in units of the last digit. [c] a, b and c are the type of transitions observed: strong, medium and weak. [d] σ is the r.m.s. deviation of the fit. [e] N is the number of fitted transitions.
Experimental spectroscopic constants of the observed isomers of fenchone–benzene.
|
|
FBEN1 |
FBEN2 |
|---|---|---|
|
|
767.45155(14)[b] |
805.56766(35) |
|
|
335.063751(64) |
314.56244(16) |
|
|
316.145309(62) |
289.98294(19) |
|
Δ |
0.04390(27) |
0.04085(71) |
|
Δ |
0.0222(14) |
0.0536(61) |
|
|
0.00195(18) |
0.00287(60) |
|
|
m/w/s |
m/–/s |
|
|
3.8 |
6.5 |
|
|
215 |
116 |
[a] A, B and C are the rotational constants. Δ, Δ„ δ are the quartic centrifugal distortion constants. [b] Standard error in parentheses in units of the last digit. [c] a, b and c are the type of transitions observed: strong, medium and weak. [d] σ is the r.m.s. deviation of the fit. [e] N is the number of fitted transitions.
B3LYP‐D3BJ and MP2 spectroscopic parameters and relative energies for the isomers of the fenchone–benzene complex within 400 cm−1.
|
Isomer |
|
|
|
|
| |||||
|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
| |||||
|
|
B3LYP‐ D3BJ[a] |
MP2 |
B3LYP‐ D3BJ |
MP2 |
B3LYP‐ D3BJ |
MP2 |
B3LYP‐ D3BJ |
MP2 |
B3LYP‐ D3BJ |
MP2 |
|
|
767.5 |
768.2 |
804.8 |
803.6 |
843.1 |
857.2 |
885.7 |
868.4 |
871.6 |
863.5 |
|
|
342.1 |
354.4 |
323.2 |
332.5 |
308.5 |
316.4 |
281.8 |
294.7 |
295.7 |
308.4 |
|
|
322.5 |
334.9 |
297.9 |
306.8 |
287.8 |
294.5 |
263.9 |
275.7 |
270.9 |
281.8 |
|
|
1.0 |
0.8 |
−0.9 |
−0.8 |
−1.1 |
−1.1 |
−2.8 |
2.7 |
−2.9 |
−2.8 |
|
|
−0.4 |
−0.4 |
0.1 |
−0.2 |
−1.0 |
−1.1 |
2.1 |
1.9 |
−1.9 |
1.8 |
|
|
2.5 |
−2.3 |
2.6 |
2.4 |
2.3 |
−1.9 |
0.0 |
−0.2 |
0.4 |
0.2 |
|
Δ |
0 |
0 |
180 |
384 |
324 |
539 |
338 |
523 |
341 |
433 |
|
Δ |
0 |
0 |
195 |
329 |
309 |
482 |
316 |
490 |
305 |
380 |
|
|
22.0 |
17.4 |
20.0 |
15.5 |
18.4 |
14.0 |
18.3 |
14.4 |
18.1 |
14.5 |
|
|
|
|
|
|
| |||||
[a] All calculations were performed using the 6‐311++G(d,p) basis set. [b] A, B and C are the rotational constants. μ, μ and μ are the electric dipole moment components. [c] Relative electronic energies. [d] Relative electronic energies including the zero‐point correction. [e] Dissociation energies.
Figure 1Observed isomers of fenchone–phenol. a) NCI plots and b) distances of the relevant intermolecular interactions determined at the B3LYP‐D3BJ/6‐311++G** level of theory.
Figure 2Observed isomers of fenchone–benzene. a) NCI plots and b) distances of the relevant intermolecular interactions determined at the B3LYP‐D3BJ/6–311++G** level of theory.
Binding energy decomposition in kJ mol−1 for the observed isomers of fenchone complexes on their B3LYP‐D3BJ/6‐311++G(d,p) geometries, using SAPT(0)/jun‐cc‐pDVZ calculations within Psi4.
|
|
Δ |
Δ |
Δ |
Δ |
Δ |
|---|---|---|---|---|---|
|
| |||||
|
1w‐I |
−50.1 (65 %)[b] |
43.6 |
−14.3 (18 %) |
−12.9 (17 %) |
−33.6 |
|
1w‐II |
−43.5 (64 %) |
37.5 |
−12.2 (18 %) |
−12.3 (18 %) |
−30.5 |
|
| |||||
|
| |||||
|
g+a1 |
−53.8 (60 %) |
54.7 |
−16.9 (19 %) |
−19.6 (22 %) |
−35.5 |
|
g‐a2 |
−54.3 (60 %) |
55.4 |
−17.1 (19 %) |
−19.8 (22 %) |
−35.8 |
|
g‐b |
−47.9 (57 %) |
51.0 |
−15.0 (18 %) |
−21.7 (26 %) |
−33.6 |
|
| |||||
|
| |||||
|
FPHE1 |
−65.8 (52 %) |
75.2 |
−21.2 (17 %) |
−38.8 (31 %) |
−50.6 |
|
FPHE2 |
−66.8 (57 %) |
69.4 |
−23.4 (20 %) |
−27.6 (23 %) |
−48.4 |
|
| |||||
|
| |||||
|
FBEN1 |
−18.7 (33 %) |
34.9 |
−5.2 (9 %) |
−33.2 (58 %) |
−22.1 |
|
FBEN2 |
−15.3 (30 %) |
32.4 |
−4.4 (9 %) |
−31.5 (62 %) |
−18.9 |
[a] Ref. 17. [b] Numbers in parentheses are the percentages of the total attractive interactions. [c] Ref. 15. [d] This work.