Literature DB >> 32427978

Phylogenetic interpretation during outbreaks requires caution.

Ch Julián Villabona-Arenas1,2, William P Hanage3, Damien C Tully4,5.   

Abstract

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Year:  2020        PMID： 32427978      PMCID： PMC8168400          DOI： 10.1038/s41564-020-0738-5

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN： 2058-5276            Impact factor:   17.745


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  1 in total

1.  Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks.

Authors:  Xavier Didelot; Christophe Fraser; Jennifer Gardy; Caroline Colijn
Journal:  Mol Biol Evol       Date:  2017-04-01       Impact factor: 16.240
  1 in total
  27 in total

1.  Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling.

Authors:  Rebecca J Rockett; Alicia Arnott; Connie Lam; Rosemarie Sadsad; Verlaine Timms; Karen-Ann Gray; John-Sebastian Eden; Sheryl Chang; Mailie Gall; Jenny Draper; Eby M Sim; Nathan L Bachmann; Ian Carter; Kerri Basile; Roy Byun; Matthew V O'Sullivan; Sharon C-A Chen; Susan Maddocks; Tania C Sorrell; Dominic E Dwyer; Edward C Holmes; Jen Kok; Mikhail Prokopenko; Vitali Sintchenko
Journal:  Nat Med       Date:  2020-07-09       Impact factor: 53.440

2.  Early Emergence and Dispersal of Delta SARS-CoV-2 Lineage AY.99.2 in Brazil.

Authors:  Camila Malta Romano; Cristina Mendes de Oliveira; Luciane Sussuchi da Silva; José Eduardo Levi
Journal:  Front Med (Lausanne)       Date:  2022-06-17

Review 3.  Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic.

Authors:  Stephen W Attwood; Sarah C Hill; David M Aanensen; Thomas R Connor; Oliver G Pybus
Journal:  Nat Rev Genet       Date:  2022-04-22       Impact factor: 59.581

4.  Tracking the onset date of the community spread of SARS-CoV-2 in western countries.

Authors:  Edson Delatorre; Daiana Mir; Tiago Gräf; Gonzalo Bello
Journal:  Mem Inst Oswaldo Cruz       Date:  2020-09-04       Impact factor: 2.743

5.  Real-time public health communication of local SARS-CoV-2 genomic epidemiology.

Authors:  Chaney C Kalinich; Cole G Jensen; Peter Neugebauer; Mary E Petrone; Mario Peña-Hernández; Isabel M Ott; Anne L Wyllie; Tara Alpert; Chantal B F Vogels; Joseph R Fauver; Nathan D Grubaugh; Anderson F Brito
Journal:  PLoS Biol       Date:  2020-08-21       Impact factor: 8.029

Review 6.  SARS-CoV-2 and COVID-19: A genetic, epidemiological, and evolutionary perspective.

Authors:  Manuela Sironi; Seyed E Hasnain; Benjamin Rosenthal; Tung Phan; Fabio Luciani; Marie-Anne Shaw; M Anice Sallum; Marzieh Ezzaty Mirhashemi; Serge Morand; Fernando González-Candelas
Journal:  Infect Genet Evol       Date:  2020-05-29       Impact factor: 3.342

7.  Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel.

Authors:  Danielle Miller; Michael A Martin; Noam Harel; Omer Tirosh; Talia Kustin; Moran Meir; Nadav Sorek; Shiraz Gefen-Halevi; Sharon Amit; Olesya Vorontsov; Avraham Shaag; Dana Wolf; Avi Peretz; Yonat Shemer-Avni; Diana Roif-Kaminsky; Naama M Kopelman; Amit Huppert; Katia Koelle; Adi Stern
Journal:  Nat Commun       Date:  2020-11-02       Impact factor: 14.919

8.  Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization.

Authors:  Zhengqiao Zhao; Bahrad A Sokhansanj; Charvi Malhotra; Kitty Zheng; Gail L Rosen
Journal:  PLoS Comput Biol       Date:  2020-09-17       Impact factor: 4.475

9.  Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador.

Authors:  Bernardo Gutierrez; Sully Márquez; Belén Prado-Vivar; Mónica Becerra-Wong; Juan José Guadalupe; Darlan Da Silva Candido; Juan Carlos Fernandez-Cadena; Gabriel Morey-Leon; Rubén Armas-Gonzalez; Derly Madeleiny Andrade-Molina; Alfredo Bruno; Domenica De Mora; Maritza Olmedo; Denisse Portugal; Manuel Gonzalez; Alberto Orlando; Jan Felix Drexler; Andres Moreira-Soto; Anna-Lena Sander; Sebastian Brünink; Arne Kühne; Leandro Patiño; Andrés Carrazco-Montalvo; Orson Mestanza; Jeannete Zurita; Gabriela Sevillano; Louis Du Plessis; John T McCrone; Josefina Coloma; Gabriel Trueba; Verónica Barragán; Patricio Rojas-Silva; Michelle Grunauer; Moritz U G Kraemer; Nuno R Faria; Marina Escalera-Zamudio; Oliver G Pybus; Paúl Cárdenas
Journal:  Virus Evol       Date:  2021-06-04

10.  Mapping genome variation of SARS-CoV-2 worldwide highlights the impact of COVID-19 super-spreaders.

Authors:  Alberto Gómez-Carballa; Xabier Bello; Jacobo Pardo-Seco; Federico Martinón-Torres; Antonio Salas
Journal:  Genome Res       Date:  2020-09-02       Impact factor: 9.043
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