Collisionally activated decomposition of modified peptides using a tandem hybrid instrument.

Analyses are described of small peptides and related compounds using a tandem hybrid mass spectrometer of BEQQ geometry. Collisionally activated decomposition of [M + H]+ ions, generated by fast atom bombardment, was performed in the radio frequency (rf)-only quadrupole. Interpretation of fragmentation was greatly facilitated by analysis of labeled analogs, obtained by 18O exchange of carboxyl oxygens. N-Acetylation was also valuable although significant changes in fragmentation resulted from derivatization. Daughter ion spectra of [M + H]+ ions of angiotensin III showed diagnostic fragmentations throughout the peptide chain.