| Literature DB >> 32426353 |
Raju V S Rajala1,2,3,4.
Abstract
One hundred years ago, Otto Heinrich Warburg observed that postmitotic retinal cells are the highest oxygen-consuming cells in the body. He compared these cells to actively growing mitotic tumor cells since both cells reprogram glucose for anabolic processes, which include lipid, protein, and RNA/DNA synthesis, and for antioxidant metabolism. To achieve this metabolic reprogramming, cancer cells preferentially express a less active dimeric form, the M2 isoform of pyruvate kinase (PKM2), which shuttles glucose toward the accumulation of glycolytic intermediates that redirect cell activities into anabolic processes. Similar to cancer cells, retinal photoreceptors predominantly express the M2 isoform of PKM2. This isoform performs both metabolic and non-metabolic functions in photoreceptor cells. This review focuses on the metabolic and non-metabolic roles of pyruvate kinases in photoreceptor cell functions.Entities:
Keywords: Warburg effect; anabolic processes; glycolysis; photoreceptor cells; posttranslational modifications; pyruvate kinase M1; pyruvate kinase M2
Year: 2020 PMID: 32426353 PMCID: PMC7203425 DOI: 10.3389/fcell.2020.00266
Source DB: PubMed Journal: Front Cell Dev Biol ISSN: 2296-634X
FIGURE 1Aerobic glycolysis in photoreceptor functions. Photoreceptors are post-mitotic cells, interdigitated with retinal pigment epithelium (RPE). Glucose enters the RPE through choroidal circulation. Bruch’s membrane (BM) separates the RPE and choroid. Glucose from the RPE is transported to a photoreceptor through glucose transporter 1 (Glut1). In photoreceptor cells, the majority of glucose is redirected to anabolic processes. Every day by the onset of light, 10% of photoreceptor tips are phagocytosed by the RPE, and some of the digested lipids are recycled back to photoreceptor cells. A high rate of membrane synthesis takes place in photoreceptor cells. The redirected glucose is utilized for the anabolic processes, which include lipid synthesis, RNA/DNA synthesis, and protein synthesis. The NADPH generated through the pentose phosphate pathway (PPP) is used for lipid synthesis and reduction of all-trans-retinal to all-trans-retinol by the retinol dehydrogenase 8 (RDH8). NADPH is also needed for antioxidant metabolism. Photoreceptor cells express predominantly PKM2, while PKM1 is a minor protein. Pyruvate formed during glycolysis will be converted to lactate by lactate dehydrogenase (LDH). Lactate is transported to RPE through lactate transporters (monocarboxylate transporter), where it converts to pyruvate through LDH to fuel mitochondria. Glucose-mediated oxidative phosphorylation is minimal. PKM2 favors aerobic glycolysis and has a lower affinity for PEP, which results in the accumulation of PEP in the outer segments, which triggers the PPP. BM, Bruch’s membrane; RPE, retinal pigment epithelium; OS, outer segment; IS, inner segment; RDH8, retinal dehydrogenase 8; PEP, phosphoenolpyruvate; LDH, lactate dehydrogenase; PKM1, M1 isoform of pyruvate kinase; PKM2, M2 isoform of pyruvate kinase; Glut1, glucose transporter 1; MCT, monocarboxylate transporter.
FIGURE 2Structural comparison between mouse PKM1 and PKM2. The crystal structure of human PKM1 and PKM2 has been solved (PDB ID: PKM2, 4JPG, PKM1, 3SRF). We carried out the molecular modeling of mouse PKM1 and PKM2 using the Raptor X template-based protein structure modeling web server and aligned, with Clustal Omega, and the resulting structures were generated using the UCSF Chimera program and PyMOL (PyMOL Molecular Graphics System, Version 4.5 Schrödinger, LLC). The structural alignment of PKM1 and PKM2 at the different views (A–C). The purple color represents PKM1 divergent region/residue and the red represents PKM1 conserved region/residue. The green color represents the PKM2 divergent region/residues and the blue represents PKM2 conserved region/residue. The majority of residues in PKM1 are identical to PKM2, except a region where diverge can be noticed in the linker region (see arrowhead) and 2 alpha helices (see arrow). A significant divergence was shown to be localized to residues 389–428 which consist of 2 alpha helices and joining linker region (D). inset: Divergent protein sequence between PKM1 and PKM2 (389–428). The surface plots of PKM1 (E) and PKM2 (F), respectively as seen in panel (D).
RMSD generated using Pymol standard algorithm.
| Full-length protein | 1–531 | 0.38 |
| Divergent region (2α-helices) | 389–428 | 0.54 |
| Full-length protein excluding the divergent region | 1–388, 429–531 | 0.33 |
FIGURE 3Cell-specific Pkm expression in adult mouse retina on single-cell RNA-seq analysis. From this publicly available database https://proteinpaint.stjude. org/F/2019.retina.scRNA.html, we searched the Pkm gene expression in various cell types of the retina from single-cell RNA-seq analysis (A). t-distributed stochastic neighbor embedding (t-SNE) plots of gene expression distribution in adult mouse retina (B). Each dot represents a single cell. Levels of gene expression of Pkm in different cell types (C). FPKM: Fragments/Kilobase of transcript per Million mapped reads. Violin plots showing expression levels Pkm gene in different cell types of the mouse retina (D).