Literature DB >> 32421987

Identification of Potential Core Genes in Immunoglobulin-Resistant Kawasaki Disease Using Bioinformatics Analysis.

Yan Pan1, Qihong Fan1.   

Abstract

Intravenous immunoglobulin (IVIG)-resistant Kawasaki disease (KD) is a complex disease, leading to the damage of multiple systems. The pathogen that triggers this sophisticated disease is still unknown. The aim of this study was to identify gene signatures during IVIG-resistant KD and uncover their potential mechanisms. The gene expression profiles of GSE18606 were downloaded from the GEO database. The GSE18606 dataset contained eight IVIG-resistant KD samples and nine healthy age-appropriate controls. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway analyses were performed, and protein-protein interaction (PPI) network of the differentially expressed genes (DEGs) was constructed by Cytoscape software. In total, 73 DEGs were identified in IVIG-resistant KD, including 58 upregulated genes and 15 downregulated genes. GO analysis results showed that DEGs were significantly enriched in biological processes of neutrophil degranulation, neutrophil mediated immunity, and neutrophil activation involved in immune response. Among them, 10 hub genes (S100A8, S100A9, S100A12, HGF, LCN2, LY96, CTGF, MMP8, IRAK3, and SLPI) with a high degree of connectivity were selected. The present study indicated that the identified DEGs and hub genes promote our understanding of the molecular mechanisms underlying the development of IVIG-resistant KD, and might be used as molecular targets and diagnostic biomarkers for the treatment of IVIG-resistant KD.

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Year:  2020        PMID: 32421987     DOI: 10.1615/CritRevEukaryotGeneExpr.2020028702

Source DB:  PubMed          Journal:  Crit Rev Eukaryot Gene Expr        ISSN: 1045-4403            Impact factor:   1.807


  3 in total

1.  Altered Monocyte Subsets in Kawasaki Disease Revealed by Single-cell RNA-Sequencing.

Authors:  Zhimin Geng; Yijing Tao; Fenglei Zheng; Linlin Wu; Ying Wang; Yujia Wang; Yameng Sun; Songling Fu; Wei Wang; Chunhong Xie; Yiying Zhang; Fangqi Gong
Journal:  J Inflamm Res       Date:  2021-03-16

2.  Identification of rare coding variants associated with Kawasaki disease by whole exome sequencing.

Authors:  Jae-Jung Kim; Young Mi Hong; Sin Weon Yun; Kyung-Yil Lee; Kyung Lim Yoon; Myung-Ki Han; Gi Beom Kim; Hong-Ryang Kil; Min Seob Song; Hyoung Doo Lee; Kee Soo Ha; Hyun Ok Jun; Byung-Ok Choi; Yeon-Mok Oh; Jeong Jin Yu; Gi Young Jang; Jong-Keuk Lee
Journal:  Genomics Inform       Date:  2021-12-31

3.  Crucial transcripts predict response to initial immunoglobulin treatment in acute Kawasaki disease.

Authors:  Zhimin Geng; Jingjing Liu; Jian Hu; Ying Wang; Yijing Tao; Fenglei Zheng; Yujia Wang; Songling Fu; Wei Wang; Chunhong Xie; Yiying Zhang; Fangqi Gong
Journal:  Sci Rep       Date:  2020-10-20       Impact factor: 4.379

  3 in total

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