Literature DB >> 32421914

2,3-Dihydroxybenzoic Acid Decarboxylase from Fusarium oxysporum: Crystal Structures and Substrate Recognition Mechanism.

Mengkun Song1,2, Xuemei Zhang1,2, Weidong Liu2, Jinghui Feng2, Yunfeng Cui2, Peiyuan Yao2, Min Wang1, Rey-Ting Guo2, Qiaqing Wu2, Dunming Zhu2.   

Abstract

A 2,3-dihydroxybenzoic acid decarboxylase from Fusarium oxysporum (2,3-DHBD_Fo) has a relatively high catalytic efficiency for the decarboxylation of 2,3-dihydroxybenzoic acid (DHBA) and carboxylation of catechol, thus it has a different substrate spectrum from other benzoic acid decarboxylases. We have determined the structures of 2,3-DHBD_Fo in its apo form and complexes with catechol or 2,5-dihydroxybenzoic acid at 1.55, 1.97, and 2.45 Å resolution, respectively. The crystal structures of 2,3-DHBD_Fo show that the enzyme exists as a homotetramer, and each active center has a Zn2+ ion coordinated by E8, H167, D291 and three water molecules. This is different from 2,6-DHBD from Rhizobium sporomusa, in which the Zn2+ ion is also coordinated with H10. Surprisingly, mutation of A10 of 2,3-DHBD_Fo to His resulted in almost complete loss of the enzyme activity. Enzyme-substrate docking and site-directed mutation studies indicate that residue R233Δ interacts with the 3-hydroxy group of 2,3-DHBA, and plays an important role in substrate recognition for this enzyme, thus revealing the molecular basis 2,3-dihydroxybenzoic acid decarboxylase.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biocatalysis; dihydroxybenzoic acid decarboxylase; mutagenesis; structure elucidation; substrate recognition mechanism

Year:  2020        PMID: 32421914     DOI: 10.1002/cbic.202000244

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  2 in total

Review 1.  Mechanisms of metal-dependent non-redox decarboxylases from quantum chemical calculations.

Authors:  Xiang Sheng; Fahmi Himo
Journal:  Comput Struct Biotechnol J       Date:  2021-05-26       Impact factor: 7.271

2.  Metal Ion Promiscuity and Structure of 2,3-Dihydroxybenzoic Acid Decarboxylase of Aspergillus oryzae.

Authors:  Gerhard Hofer; Xiang Sheng; Simone Braeuer; Stefan E Payer; Katharina Plasch; Walter Goessler; Kurt Faber; Walter Keller; Fahmi Himo; Silvia M Glueck
Journal:  Chembiochem       Date:  2020-11-23       Impact factor: 3.164

  2 in total

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