Literature DB >> 32421647

Fast detection and reduction of local transient artifacts in resting-state fMRI.

Hang Joon Jo1, Richard C Reynolds2, Stephen J Gotts3, Daniel A Handwerker4, Irena Balzekas5, Alex Martin3, Robert W Cox2, Peter A Bandettini4.   

Abstract

Image quality control (QC) is a critical and computationally intensive component of functional magnetic resonance imaging (fMRI). Artifacts caused by physiologic signals or hardware malfunctions are usually identified and removed during data processing offline, well after scanning sessions are complete. A system with the computational efficiency to identify and remove artifacts during image acquisition would permit rapid adjustment of protocols as issues arise during experiments. To improve the speed and accuracy of QC and functional image correction, we developed Fast Anatomy-Based Image Correction (Fast ANATICOR) with newly implemented nuisance models and an improved pipeline. We validated its performance on a dataset consisting of normal scans and scans containing known hardware-driven artifacts. Fast ANATICOR's increased processing speed may make real-time QC and image correction feasible as compared with the existing offline method.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Artifact detection; Functional MRI; Online denoising; Real-time fMRI; Resting-state connectivity; Sliding-windowed timeseries

Year:  2020        PMID: 32421647      PMCID: PMC8056358          DOI: 10.1016/j.compbiomed.2020.103742

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  25 in total

1.  Real-time 3D image registration for functional MRI.

Authors:  R W Cox; A Jesmanowicz
Journal:  Magn Reson Med       Date:  1999-12       Impact factor: 4.668

Review 2.  Real-time functional magnetic resonance imaging.

Authors:  M S Cohen
Journal:  Methods       Date:  2001-10       Impact factor: 3.608

3.  Mapping sources of correlation in resting state FMRI, with artifact detection and removal.

Authors:  Hang Joon Jo; Ziad S Saad; W Kyle Simmons; Lydia A Milbury; Robert W Cox
Journal:  Neuroimage       Date:  2010-04-24       Impact factor: 6.556

4.  Single-shot compensation of image distortions and BOLD contrast optimization using multi-echo EPI for real-time fMRI.

Authors:  Nikolaus Weiskopf; Uwe Klose; Niels Birbaumer; Klaus Mathiak
Journal:  Neuroimage       Date:  2004-12-08       Impact factor: 6.556

5.  Head motion suppression using real-time feedback of motion information and its effects on task performance in fMRI.

Authors:  Shaolin Yang; Thomas J Ross; Yanqiong Zhang; Elliot A Stein; Yihong Yang
Journal:  Neuroimage       Date:  2005-04-21       Impact factor: 6.556

6.  Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI.

Authors:  Rasmus M Birn; Jason B Diamond; Monica A Smith; Peter A Bandettini
Journal:  Neuroimage       Date:  2006-04-24       Impact factor: 6.556

7.  Effective Preprocessing Procedures Virtually Eliminate Distance-Dependent Motion Artifacts in Resting State FMRI.

Authors:  Hang Joon Jo; Stephen J Gotts; Richard C Reynolds; Peter A Bandettini; Alex Martin; Robert W Cox; Ziad S Saad
Journal:  J Appl Math       Date:  2013-05-21

8.  Segmentation priors from local image properties: without using bias field correction, location-based templates, or registration.

Authors:  Andrej Vovk; Robert W Cox; Janez Stare; Dusan Suput; Ziad S Saad
Journal:  Neuroimage       Date:  2010-12-10       Impact factor: 6.556

9.  Direct modulation of aberrant brain network connectivity through real-time NeuroFeedback.

Authors:  Michal Ramot; Sara Kimmich; Javier Gonzalez-Castillo; Vinai Roopchansingh; Haroon Popal; Emily White; Stephen J Gotts; Alex Martin
Journal:  Elife       Date:  2017-09-16       Impact factor: 8.140

10.  fMRIPrep: a robust preprocessing pipeline for functional MRI.

Authors:  Russell A Poldrack; Krzysztof J Gorgolewski; Oscar Esteban; Christopher J Markiewicz; Ross W Blair; Craig A Moodie; A Ilkay Isik; Asier Erramuzpe; James D Kent; Mathias Goncalves; Elizabeth DuPre; Madeleine Snyder; Hiroyuki Oya; Satrajit S Ghosh; Jessey Wright; Joke Durnez
Journal:  Nat Methods       Date:  2018-12-10       Impact factor: 28.547

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  2 in total

1.  Individual [18F]FDG PET and functional MRI based on simultaneous PET/MRI may predict seizure recurrence after temporal lobe epilepsy surgery.

Authors:  Jingjuan Wang; Kun Guo; Bixiao Cui; Yaqin Hou; Guoguang Zhao; Jie Lu
Journal:  Eur Radiol       Date:  2022-01-13       Impact factor: 5.315

2.  The benefit of high-performance gradients on echo planar imaging for BOLD-based resting-state functional MRI.

Authors:  Daehun Kang; Hang Joon Jo; Myung-Ho In; Uten Yarach; Nolan K Meyer; Lydia J Bardwell Speltz; Erin M Gray; Joshua D Trzasko; John Huston Iii; Matt A Bernstein; Yunhong Shu
Journal:  Phys Med Biol       Date:  2020-11-27       Impact factor: 3.609

  2 in total

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