| Literature DB >> 32414087 |
Tiyyaba Furqan1, Sidra Batool2, Rabia Habib1, Mamoona Shah1, Huba Kalasz3, Ferenc Darvas4, Kamil Kuca5, Eugenie Nepovimova5, Sajida Batool1, Syed M Nurulain1.
Abstract
The study documented here was aimed to find the molecular interactions of some of the cannabinoid constituents of cannabis with acetylcholinesterase (AChE). Molecular docking and LogP determination were performed to predict the AChE inhibitory effect and lipophilicity. AChE enzyme activity was measured in the blood of cannabis addicted human subjects. Further, genetic predisposition to cannabis addiction was investigated by association analysis of cannabinoid receptor 1 (CNR1) single nucleotide polymorphism (SNP) rs806368 and ACHE rs17228602 using restriction fragment length polymorphism (RFLP) method. All the understudied cannabis constituents showed promising binding affinities with AChE and are lipophilic in nature. The AChE activity was observed to be indifferent in cannabis addicted and non-addicted healthy controls. There was no significant association with CNR1 SNP rs806368 and ACHE rs17228602. The study concludes that in silico prediction for individual biomolecules of cannabis is different from in vivo physiological action in human subjects when all are present together. However, for a deeper mechanistic insight into these interactions and association, multi-population studies are suggested. Further studies to explore the inhibitory potential of different cannabis constituents for intended AChE inhibitor-based drug are warranted.Entities:
Keywords: acetylcholinesterase; cannabis; cholinergic; rs17228602; rs806368
Mesh:
Substances:
Year: 2020 PMID: 32414087 PMCID: PMC7277636 DOI: 10.3390/biom10050758
Source DB: PubMed Journal: Biomolecules ISSN: 2218-273X
Binding pockets of selected inhibited acetylcholinesterase (AChE) protein.
| Catalytic Triad | Acyl Pocket | Peripheral Anionic Site | Phosphyl Site | |
|---|---|---|---|---|
| Acetylcholinesterase (4PQE) | Ser-203 | Phe297 | Ser125 | Val294 |
Parameters used in Vina search space for docking.
| Center (Å) | Dimensions (Å) | ||
|---|---|---|---|
| X | –27.5501 | X | 65.5753 |
| Y | –0.2162 | Y | 62.4444 |
| Z | 50.3675 | Z | 57.9704 |
Primer sequences for single nucleotide polymorphisms (SNPs) rs806368 and rs17228602.
| Primer’s ID | Primer’s Sequences | Tm | Product Size |
|---|---|---|---|
|
| |||
| 5′GCAACGATGTTACCAGCTCAAC3′ | 62.0 C | ||
| 5′ATTGTCTTGCACTGGCCTTCTG3′ | 63.8 C | 401 bp | |
|
| |||
| 5′GAGGAGGAGAAAAGAATGACC3′ | 56.9 C | ||
| 5′TCCTCTAATGAGTGGTCGGAC3′ | 59.2 C | 365 bp |
Quantity of reagents and procedure used for the genotyping of rs806368 and rs17228602.
| Reagents | Quantity of Reagents for rs806368 (µL) | Quantity of Reagents for rs17228602 (µL) |
|---|---|---|
| Taq Buffer | 2.5 (1 X) | 2.5 (1 X) |
| MgCl2 | 3.0 (1.5 mM) | 3.0 (1.5 mM) |
| dNTPs | 0.5(2.5 mM) | 0.5 (2.5 mM) |
| Primers | F = 0.5 (10 pmol) | F = 0.5 (10 pmol) |
| PCR water | 14.5 | 14.5 |
| DNA sample | 3.0 (25 ng/uL) | 3.0 (30 ng/uL) |
| Taq polymerase | 0.5 (5 units) | 0.5 (5 units) |
| Thermal Profile | ||
| Denaturation | 95 °C for 5 min | 95 °C for 5 min |
| Annealing | 57 °C for 30 sec | 56.5 °C for 30 sec |
| Extension | 72 °C for 1 min | 72 °C for 45 sec |
| Total cycles | 35 X | 35 X |
Figure 1Identification of cannabinoid receptor 1 (CNR1) rs806368 polymorphism. Lanes L, DNA ladder, 1 and 4 show CT heterozygotes (Cleaved PCR product 248 bp, 154 bp and uncleaved PCR product 401 bp), 2 CC homozygote (cleaved PCR product into 248 bp and 154 bp fragments), 3 TT homozygote (uncleaved PCR product 401 bp).
Figure 2Identification of AChE rs17228602 polymorphism. L, DNA ladder, 1, 2, 4 show TC heterozygotes (Cleaved fragments 224 bp, 141 bp and uncleaved PCR products 365 bp), 3 shows CC homozygote (Cleaved PCR product into 224 bp and 141 bp fragments).
Binding energies of Cannabis components in blind docking against AChE.
| Ligand Name | Free Binding Energy (Kcal/mol) | Hydrogen Bonding | π-π Interactions | Van der Waals Interactions | |
|---|---|---|---|---|---|
| Interacting Residues | Bond Distance | ||||
| THC | −9.3 | No H bond | N/A | Trp286 | Tyr337, Tyr124, Asp74, His 287, Leu289, Ser293, Arg296, Phe295 |
| Cannabielsoin | −7.7 | No H bond | N/A | Trp286 | Ser293, Leu289, His287, Phe295, Tyr337, Tyr124, Tyr341, Val294 |
| Cannabichromene | −7.6 | No H bond | N/A | N/A | Val294, Phe295, Phe297, Phe338, Ser203, Gly121, Tyr124, Tyr337, Gly122 |
| Cannabicyclol | −8.1 | TYR 341 | 3.51 | Trp286 | Tyr124, Ser293, Phe297, Phe338, Phe295, Val294, Arg296 |
| Cannabidiol | −7.5 | No H bond | N/A | N/A | Arg296, Tyr124, Val294, Phe338, Phe297, Phe295 |
| Cannabigerol | −7.0 | TYR 341 | 4.73 | Trp286 | Phe295, Tyr124, Tyr337, Phe297, Ser293, Gly342, His287 |
| Cannabinol | −8.6 | No H bond | N/A | Tyr341, Tyr124, Trp286 | Arg296, Phe295, Phe338, Tyr337, Asp74, Tyr72, Ser293 |
| Cannabitriol | −7.9 | No H bond | N/A | N/A | His287, Tyr124, Phe338, Phe297, Phe295, Arg296, Val294, Ser293, Leu289 |
| Cannabivarin | −8.6 | No H bond | N/A | Tyr124 | Asp74, Tyr337, Phe295, Arg296, Ser293 |
| Donepezil | −8.3 | No H bond | N/A | Trp286 | His287, Tyr72, Leu76, Tyr124, Phe297, Phe338, Phe295, Val 294 |
| Paraoxon | −6.1 | TYR72 | 5.58 | Trp286 | Leu76, Arg296, Val294, Phe297, Phe338, Tyr124 |
Figure 3Complex of all ligands with receptor acetylcholinesterase. The receptor is shown in green and all the ligands are depicted in different colors on the same location with the receptor.
Figure 4Two-dimensional binding representation of AChE with different ligands: (1) THC (tetrahydrocannabinol), (2) cannabielsoin, (3) Cannabichromene, (4) Cannabicyclol, (5) Cannabidiol, (6) Cannabigerol, (7) Cannabinol, (8) Cannabitriol, (9) Cannabivarin, (10) Donepezil, (11) Paraoxon.
LogP values and molecular structures of constituents of cannabis, donepezil and paraoxon.
| Chemical Name | logP | Chemical Structure |
|---|---|---|
| Δ9-Tetrahydrocannabinol | 7.26 |
|
| Cannabinol | 5.58 |
|
| Cannabidiol | 7.75 |
|
| Cannabicyclol | 4.96 |
|
| Cannabitriol | 8.04 |
|
| Cannabielsoin | 7.64 |
|
| Cannabigerol | 8.59 |
|
| Cannabichromene | 8.28 |
|
| Cannabivarin | 6.98 |
|
| Paraoxon | 2.07 |
|
| Donepezil | 3.39 |
|
Acetylcholinesterase activity in non-addicted and cannabis addicted subjects.
| Groups | Mean | SD | SE | 95% Confidence Interval for Mean | |
|---|---|---|---|---|---|
| Lower Bound | Upper Bound | ||||
| Non-addicted | 0.016 | 0.011 | 0.002 | 0.011 | 0.020 |
| Cannabis addicted | 0.016 | 0.003 | 0.001 | 0.014 | 0.017 |
Association analysis of CNR1 rs806368 between cannabis addicts and non-addicts.
| Genotype | Cannabis Addicts | Non-Addicts n = 40 (%) | Odd Ratio (95% CI) | |
|---|---|---|---|---|
| TT | 18 (45) | 21 (52.5) | 2.872 | |
| TC | 22 (55) | 17 (42.5) | ||
| CC | 0 (0%) | 02 (5) | ||
| Dominant model | 18/22 | 21/19 | 0.740 (0.307–1.784) | 0.450 |
| Allele | ||||
| T | 58/80 | 59/80 | 0.938 (0.466–1.888) | 0.0318 |
| C | 22/80 | 21/80 | ||
Association analysis of ACHE rs17228602 between cannabis addicts and non-addicts.
| Cannabis Addicts | Non-Addicts | Odd Ratio (95% CI) | ||
|---|---|---|---|---|
| CC | 36 (73.47) | 31 (63.27) | 1.180 | |
| CT | 13 (26.53) | 18 (36.73) | ||
| TT | 0 (0%) | 0 (0%) | ||
| Dominant model | 36/13 | 31/18 | 0.623 (0.263–1.470) | 1.180 |
| Allele | ||||
| C | 85/98 | 80/98 | 1.471 (0.677–3.197) | 0.958 |
| T | 13/98 | 18/98 | ||
| Cannabis Addicts | Non-Addicts | Odd ratio (95% CI) | ||
| CC | 36 (73.47) | 31 (63.27) | 1.180 | |
| CT | 13 (26.53) | 18 (36.73) | ||
| TT | 0 (0%) | 0 (0%) | ||
| Dominant model | 36/13 | 31/18 | 0.623 (0.263–1.470) | 1.180 |
| Allele | ||||
| C | 85/98 | 80/98 | 1.471 (0.677–3.197) | 0.958 |
| T | 13/98 | 18/98 | ||