| Literature DB >> 32411619 |
Philipp P Nelson1, Barbara A Rath2,3,4, Paraskevi C Fragkou4,5, Emmanouil Antalis5, Sotirios Tsiodras4,5, Chrysanthi Skevaki1,4.
Abstract
The availability of pathogen-specific treatment options for respiratory tract infections (RTIs) increased the need for rapid diagnostic tests. Besides, retrospective studies, improved lab-based detection methods and the intensified search for new viruses since the beginning of the twenty-first century led to the discovery of several novel respiratory viruses. Among them are human bocavirus (HBoV), human coronaviruses (HCoV-HKU1, -NL63), human metapneumovirus (HMPV), rhinovirus type C (RV-C), and human polyomaviruses (KIPyV, WUPyV). Additionally, new viruses like SARS coronavirus (SARS-CoV), MERS coronavirus (MERS-CoV), novel strains of influenza virus A and B, and (most recently) SARS coronavirus 2 (SARS-CoV-2) have emerged. Although clinical presentation may be similar among different viruses, associated symptoms may range from a mild cold to a severe respiratory illness, and thus require a fast and reliable diagnosis. The increasing number of commercially available rapid point-of-care tests (POCTs) for respiratory viruses illustrates both the need for this kind of tests but also the problem, i.e., that the majority of such assays has significant limitations. In this review, we summarize recently published characteristics of POCTs and discuss their implications for the treatment of RTIs. The second key aspect of this work is a description of new and innovative diagnostic techniques, ranging from biosensors to novel portable and current lab-based nucleic acid amplification methods with the potential future use in point-of-care settings. While prototypes for some methods already exist, other ideas are still experimental, but all of them give an outlook of what can be expected as the next generation of POCTs.Entities:
Keywords: POCT; bedside testing; biosensors; commercial point-of-care tests; innovative approaches; virus diagnostics
Year: 2020 PMID: 32411619 PMCID: PMC7202255 DOI: 10.3389/fcimb.2020.00181
Source DB: PubMed Journal: Front Cell Infect Microbiol ISSN: 2235-2988 Impact factor: 5.293
Selected commercial nucleic acid-based point-of-care tests (ordered by time to result).
| Cepheid Xpert® Xpress Flu/RSV | rRT-PCR/20-30 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2, AIV (H5N2, H5N8) |
| Mesabiotech™ Accula™ Influenza A&B and RSV | RT-PCR/30 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2 |
| Sekisui Diagnostics Silaris™ Influenza A&B Test | PCR/30 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2 |
| Cepheid Xpert® Flu/RSV XC | rRT-PCR/40-63 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2, AIV (H5N2, H5N8) |
| (Cepheid Xpert® Xpress SARS-CoV-2, | rRT-PCR/ 45 | N/A | N/A | • | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
| BioMérieuxBioFire® FilmArray® Respiratory Panel 2 | Endpoint melt curve analysis/45 | N/A | N/A | N/A | • | 95.8/99.8 | 95.8/100 | N/A | 94.6/99.2 | N/A | H1N1pdm09, H3N2 |
| Quidel® Solana® Respiratory Viral Panel Influenza A&B and RSV & HMPV | RT-HDA/45 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | • | N/A | |
| DiaSorin Simplexa™ Flu A/B & RSV Direct Kit | RT-PCR/60 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2, >20 AIVs, 2 swine influenza strains |
| Cepheid Xpert® Flu | rRT-PCR/75 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09 |
| Luminex Verigene® RP Flex Test | RT-PCR/ <120 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | • | N/A | H1, H3 |
| GenMark Dx® ePlex® Respiratory Panel | PCR/ <120 | N/A | N/A | N/A | N/A | • | • | N/A | N/A | N/A | H1N1pdm09, H3N2 |
| (GenMark Dx ePlex® SARS-CoV-2 Test, | rRT-PCR/ <120 | N/A | N/A | • | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
| (QIAGEN, | rRT-PCR/120 | 100/99.5 | N/A | N/A | N/A | 100/100 | 91.7/100 | N/A | 100/100 | N/A | H1N1pdm09, H3N2 |
Cepheid Xpert Flu. Product Page. Available online at: .
Mesabiotech™ Accula™ Flu A/FluB Test Package Insert. Manual. Available online at: .
Sekisui Diagnostics Silaris™ Influenza A&B Test. Manual. 481. Available online at: .
Biomerieux BIOFIRE.
Quidel.
DiaSorin Simplexa.
Luminex Verigene® Respiratory Pathogens Flex Test. Product Page. Available online at: .
N/A, Virus not included in this assay; • Virus included, but specificity/sensitivity not available; RT-HAD, Reverse transcriptase helicase-dependent amplification; RT-PCR, Reverse transcriptase polymerase chain reaction; rRT-PCR, real-time RT-PCR; HBoV, Human bocavirus; (H)CoV, (Human) coronavirus; KI/WUPyV, KI/WU polyomavirus; HMPV, Human metapneumovirus; RV-C, Human rhinovirus type C; IAV, Influenza A virus; IBV, Influenza B virus; H1N1pdm09, Influenza A H1N1 pandemic 2009; AIV, Avian influenza virus; RSV, Respiratory Syncytial virus.
Please refer to .
Two different kits for Influenza (A, B) and RSV;
Performance reviewed in Basile et al. (;
Described in Loeffelholz et al. (;
Performance tested by Babady et al. (;
For use under the Emergency Use Authorization (EUA) only.
Selected commercial antigen-based point-of-care tests (ordered by time to result).
| BD Veritor™ System Influenza A+B and RSV | LFIC/Digital immunoassay/10-11 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2, AIV (H5N1, H5N2, N7N9) |
| Abbott SD BIOLINE Influenza Ag A/B/A(H1N1) pandemic | CI/10-15 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09 |
| Princeton BioMeditech BioSign® Rapid Flu A+B Antigen Panel Test | ICMI/10-15 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2v, AIV (H5N1, H7N9) |
| Quidel® QuickVue® Influenza A+B and RSV | LFIC/10-15 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H3N2, variable performance against other strains |
| Abbott Alere BinaxNOW® Influenza A+B and RSV | LFIC/15 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H3 |
| Quidel® Sofia® Influenza A+B Fluorescent Immunoassay | FIA/15 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2, variable performance against other strains |
| Thermo Scientific™ Xpect™ Influenza A+B and RSV | LFIC/15 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | H1N1pdm09, H3N2, AIV (H5N1, H7N9, H9N2) |
| ArcDia mariPOC® Respi | PE/20-120 | 76.5/100 | N/A | N/A | N/A | N/A | N/A | N/A | 78/100 | N/A | H1N1v, H2N2, H3N2, AIV (H5N1, H7N9, H9N2, H7N3) |
BDVeritor™ Flu A+B. Product Page. Available online at: .
Abbot SD BIOLINE Influenza Ag A/ B/ A(H1N1) Pandemic. Product Page. Available online at: .
Princeton BioMeditech BioSign® Flu A+B. Product Page. Available online at: .
Quidel® QuickVue® Influenza A+B Test. Manual. Available online at: .
Abbot Alere Binax NOW®. Product Page. Available online at: .
Quidel® Sofia® Influenza A+B FIA. Manual. Available online at: .
Thermo Scientific™ Xpect™ Flu A and B, and RSV. Brochure. Available online at: .
ArcDia mariPOC® respi. Brochure. Available online at: .
N/A, Virus not included in this assay; FIA, Fluorescent immunoassay; LFIC, Lateral flow immunochromatography assay; CI, Chromatographic immunoassay; PE, Photofluorescent excitation; ICMI, Immunochromatographic membrane immunoassay; HBoV, Human bocavirus; (H)CoV, (Human) coronavirus; KI/WUPyV, KI/WU polyomavirus; HMPV, Human metapneumovirus; RV-C, Human rhinovirus type C; IAV, Influenza A virus; H1N1pdm09, Influenza A H1N1 pandemic 2009; AIV, Avian influenza virus; IBV, Influenza B virus; RSV, Respiratory Syncytial virus.
Please refer to .
Two different kits for Influenza (A, B) and RSV;
Performance reviewed in Basile et al. (.