Literature DB >> 32410021

Analysis of Lifespan in C. elegans: Low- and High-Throughput Approaches.

Adam B Cornwell1, Andrew V Samuelson2.   

Abstract

Lifespan is the most straightforward surrogate measure of aging, as it is easily quantifiable. A common approach to measure Caenorhabditis elegans lifespan is to follow a population of animals over time and score viability based on movement. We previously developed an alternative approach, called the Replica Set method, to quantitatively measure lifespan of C. elegans in a high-throughput manner. The replica set method allows a single investigator to screen more treatments or conditions in the same amount of time without loss of data quality. The method requires common equipment found in most laboratories working with C. elegans and is thus simple to adopt. Unlike traditional approaches, the Replica Set method centers on assaying independent samples of a population at each observation point, rather than a single sample over time as with "traditional" longitudinal methods. The protocols provided here describe both the traditional experimental approach and the Replica Set method, as well as practical considerations for each.

Entities:  

Keywords:  Aging; C. elegans; High-throughput; Kaplan–Meier; Lifespan; Logistic regression; Statistical analysis of quantitative phenotypes; Survival analysis

Mesh:

Year:  2020        PMID: 32410021      PMCID: PMC9113156          DOI: 10.1007/978-1-0716-0592-9_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  30 in total

1.  Specific interference by ingested dsRNA.

Authors:  L Timmons; A Fire
Journal:  Nature       Date:  1998-10-29       Impact factor: 49.962

2.  Defining wild-type life span in Caenorhabditis elegans.

Authors:  D Gems; D L Riddle
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2000-05       Impact factor: 6.053

3.  Two-parameter logistic and Weibull equations provide better fits to survival data from isogenic populations of Caenorhabditis elegans in axenic culture than does the Gompertz model.

Authors:  J R Vanfleteren; A De Vreese; B P Braeckman
Journal:  J Gerontol A Biol Sci Med Sci       Date:  1998-11       Impact factor: 6.053

4.  Gene activities that mediate increased life span of C. elegans insulin-like signaling mutants.

Authors:  Andrew V Samuelson; Christopher E Carr; Gary Ruvkun
Journal:  Genes Dev       Date:  2007-11-15       Impact factor: 11.361

5.  The C. elegans lifespan assay toolkit.

Authors:  Francis Raj Gandhi Amrit; Ramesh Ratnappan; Scott Alexander Keith; Arjumand Ghazi
Journal:  Methods       Date:  2014-04-13       Impact factor: 3.608

6.  Starvation-induced transgenerational inheritance of small RNAs in C. elegans.

Authors:  Oded Rechavi; Leah Houri-Ze'evi; Sarit Anava; Wee Siong Sho Goh; Sze Yen Kerk; Gregory J Hannon; Oliver Hobert
Journal:  Cell       Date:  2014-07-10       Impact factor: 41.582

7.  Rictor/TORC2 regulates fat metabolism, feeding, growth, and life span in Caenorhabditis elegans.

Authors:  Alexander A Soukas; Elizabeth A Kane; Christopher E Carr; Justine A Melo; Gary Ruvkun
Journal:  Genes Dev       Date:  2009-02-15       Impact factor: 11.361

8.  Impact of genetic background and experimental reproducibility on identifying chemical compounds with robust longevity effects.

Authors:  Mark Lucanic; W Todd Plummer; Esteban Chen; Jailynn Harke; Anna C Foulger; Brian Onken; Anna L Coleman-Hulbert; Kathleen J Dumas; Suzhen Guo; Erik Johnson; Dipa Bhaumik; Jian Xue; Anna B Crist; Michael P Presley; Girish Harinath; Christine A Sedore; Manish Chamoli; Shaunak Kamat; Michelle K Chen; Suzanne Angeli; Christina Chang; John H Willis; Daniel Edgar; Mary Anne Royal; Elizabeth A Chao; Shobhna Patel; Theo Garrett; Carolina Ibanez-Ventoso; June Hope; Jason L Kish; Max Guo; Gordon J Lithgow; Monica Driscoll; Patrick C Phillips
Journal:  Nat Commun       Date:  2017-02-21       Impact factor: 14.919

9.  The homeodomain-interacting protein kinase HPK-1 preserves protein homeostasis and longevity through master regulatory control of the HSF-1 chaperone network and TORC1-restricted autophagy in Caenorhabditis elegans.

Authors:  Ritika Das; Justine A Melo; Manjunatha Thondamal; Elizabeth A Morton; Adam B Cornwell; Beresford Crick; Joung Heon Kim; Elliot W Swartz; Todd Lamitina; Peter M Douglas; Andrew V Samuelson
Journal:  PLoS Genet       Date:  2017-10-16       Impact factor: 5.917

10.  New genes tied to endocrine, metabolic, and dietary regulation of lifespan from a Caenorhabditis elegans genomic RNAi screen.

Authors:  Malene Hansen; Ao-Lin Hsu; Andrew Dillin; Cynthia Kenyon
Journal:  PLoS Genet       Date:  2005-07-25       Impact factor: 5.917

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  2 in total

1.  The Replica Set Method is a Robust, Accurate, and High-Throughput Approach for Assessing and Comparing Lifespan in C. elegans Experiments.

Authors:  Adam Cornwell; Jesse R Llop; Peter Salzman; Niels Rasmussen; Juilee Thakar; Andrew V Samuelson
Journal:  Front Aging       Date:  2022-04-28

Review 2.  Phenotypic Screening in C. elegans as a Tool for the Discovery of New Geroprotective Drugs.

Authors:  Sven Bulterijs; Bart P Braeckman
Journal:  Pharmaceuticals (Basel)       Date:  2020-07-25
  2 in total

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