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Literature DB >> 32405169

CpGDB : A Comprehensive Database of Chloroplast Genomes.

Bhupinder Pal Singh^1,2, Ajay Kumar³, Harpreet Kaur⁴, Harpreet Singh⁵, Avinash Kaur Nagpal⁴.

Abstract

Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same or different families of spermatophytes. Presently, the database consists of genome sequences, individual gene sequences and feature records of chloroplast genomes of 3823 plant species belonging to 1527 genera from 256 families, which will be updated regularly with the availability of new sequences at NCBI. Extensive data mining of feature records from GenBank files, uniform nomenclature for majority of genes, enriched intron/exon feature records makes CpGDB a valuable resource for studies in chloroplast genomics while complementing existing chloroplast databases.

Entities: Chemical Disease Species

Keywords: Chloroplast Genomes; Database; Gene Sequences

Year: 2020 PMID： 32405169 PMCID： PMC7196173 DOI： 10.6026/97320630016171

Source DB: PubMed Journal: Bioinformation ISSN： 0973-2063

7 in total

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Journal: Nucleic Acids Res Date: 2006-01-01 Impact factor: 16.971

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Authors: Berthold Heinze
Journal: Plant Methods Date: 2007-02-27 Impact factor: 4.993

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Authors: Rui Zhang; Fangfang Ge; Huayang Li; Yudong Chen; Ying Zhao; Ying Gao; Zhiguo Liu; Long Yang
Journal: Database (Oxford) Date: 2019-01-01 Impact factor: 3.451

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Authors: Emmet A O'Brien; Yue Zhang; Eric Wang; Veronique Marie; Wole Badejoko; B Franz Lang; Gertraud Burger
Journal: Nucleic Acids Res Date: 2008-10-25 Impact factor: 16.971

7. Five Complete Chloroplast Genome Sequences from Diospyros: Genome Organization and Comparative Analysis.

Authors: Jianmin Fu; Huimin Liu; Jingjing Hu; Yuqin Liang; Jinjun Liang; Tana Wuyun; Xiaofeng Tan
Journal: PLoS One Date: 2016-07-21 Impact factor: 3.240

7 in total

6 in total

1. Mangrove tree (Avicennia marina): insight into chloroplast genome evolutionary divergence and its comparison with related species from family Acanthaceae.

Authors: Sajjad Asaf; Abdul Latif Khan; Muhammad Numan; Ahmed Al-Harrasi
Journal: Sci Rep Date: 2021-02-11 Impact factor: 4.379

2. Decoding first complete chloroplast genome of toothbrush tree (Salvadora persica L.): insight into genome evolution, sequence divergence and phylogenetic relationship within Brassicales.

Authors: Abdul Latif Khan; Sajjad Asaf; Ahmed Al-Rawahi; Ahmed Al-Harrasi
Journal: BMC Genomics Date: 2021-04-30 Impact factor: 3.969

3. Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives.

Authors: Tony Heitkam; Daniela Holtgräwe; Katharina Sielemann; Boas Pucker; Nicola Schmidt; Prisca Viehöver; Bernd Weisshaar
Journal: BMC Genomics Date: 2022-02-10 Impact factor: 3.969