Literature DB >> 32404922

CFTR variant testing: a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Joshua L Deignan1, Caroline Astbury2, Garry R Cutting3, Daniela Del Gaudio4, Anthony R Gregg5, Wayne W Grody6, Kristin G Monaghan7, Sue Richards8.   

Abstract

Pathogenic variants in the CFTR gene are causative of classic cystic fibrosis (CF) as well as some nonclassic CF phenotypes. In 2001, CF became the first target of pan-ethnic universal carrier screening by molecular methods. The American College of Medical Genetics and Genomics (ACMG) recommended a core panel of 23 disease-causing variants as the minimal set to be included in pan-ethnic carrier screening of individuals with no family history of the disease, and these variants were usually assessed using targeted methods. The original recommendation also left open the option for laboratories to offer expanded CFTR variant panels; however, at the time, expanded CFTR variant panels were met with some controversy on the basis of the available technologies and the limited phenotypic knowledge of rare variants. Both of those aspects have now evolved, prompting this update of the ACMG technical standards for CFTR variant testing.

Entities:  

Keywords:  fibrosis; genome; pancreatitis; screening; variant

Mesh:

Substances:

Year:  2020        PMID: 32404922      PMCID: PMC8268680          DOI: 10.1038/s41436-020-0822-5

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  21 in total

1.  Identification of the cystic fibrosis gene: genetic analysis.

Authors:  B Kerem; J M Rommens; J A Buchanan; D Markiewicz; T K Cox; A Chakravarti; M Buchwald; L C Tsui
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

Review 2.  Cystic fibrosis genetics: from molecular understanding to clinical application.

Authors:  Garry R Cutting
Journal:  Nat Rev Genet       Date:  2014-11-18       Impact factor: 53.242

3.  Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA.

Authors:  J R Riordan; J M Rommens; B Kerem; N Alon; R Rozmahel; Z Grzelczak; J Zielenski; S Lok; N Plavsic; J L Chou
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

4.  Phenotypic and genetic characterization of patients with features of "nonclassic" forms of cystic fibrosis.

Authors:  Joshua D Groman; Barbara Karczeski; Molly Sheridan; Terry E Robinson; M Daniele Fallin; Garry R Cutting
Journal:  J Pediatr       Date:  2005-05       Impact factor: 4.406

5.  Variant cystic fibrosis phenotypes in the absence of CFTR mutations.

Authors:  Joshua D Groman; Michelle E Meyer; Robert W Wilmott; Pamela L Zeitlin; Garry R Cutting
Journal:  N Engl J Med       Date:  2002-08-08       Impact factor: 91.245

6.  Identification of the cystic fibrosis gene: chromosome walking and jumping.

Authors:  J M Rommens; M C Iannuzzi; B Kerem; M L Drumm; G Melmer; M Dean; R Rozmahel; J L Cole; D Kennedy; N Hidaka
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

7.  VX-659-Tezacaftor-Ivacaftor in Patients with Cystic Fibrosis and One or Two Phe508del Alleles.

Authors:  Jane C Davies; Samuel M Moskowitz; Cynthia Brown; Alexander Horsley; Marcus A Mall; Edward F McKone; Barry J Plant; Dario Prais; Bonnie W Ramsey; Jennifer L Taylor-Cousar; Elizabeth Tullis; Ahmet Uluer; Charlotte M McKee; Sarah Robertson; Rebecca A Shilling; Christopher Simard; Fredrick Van Goor; David Waltz; Fengjuan Xuan; Tim Young; Steven M Rowe
Journal:  N Engl J Med       Date:  2018-10-18       Impact factor: 91.245

8.  VX-445-Tezacaftor-Ivacaftor in Patients with Cystic Fibrosis and One or Two Phe508del Alleles.

Authors:  Dominic Keating; Gautham Marigowda; Lucy Burr; Cori Daines; Marcus A Mall; Edward F McKone; Bonnie W Ramsey; Steven M Rowe; Laura A Sass; Elizabeth Tullis; Charlotte M McKee; Samuel M Moskowitz; Sarah Robertson; Jessica Savage; Christopher Simard; Fredrick Van Goor; David Waltz; Fengjuan Xuan; Tim Young; Jennifer L Taylor-Cousar
Journal:  N Engl J Med       Date:  2018-10-18       Impact factor: 91.245

9.  Laboratory standards and guidelines for population-based cystic fibrosis carrier screening.

Authors:  W W Grody; G R Cutting; K W Klinger; C S Richards; M S Watson; R J Desnick
Journal:  Genet Med       Date:  2001 Mar-Apr       Impact factor: 8.822

10.  Cystic fibrosis population carrier screening: 2004 revision of American College of Medical Genetics mutation panel.

Authors:  Michael S Watson; Garry R Cutting; Robert J Desnick; Deborah A Driscoll; Katherine Klinger; Michael Mennuti; Glenn E Palomaki; Bradley W Popovich; Victoria M Pratt; Elizabeth M Rohlfs; Charles M Strom; C Sue Richards; David R Witt; Wayne W Grody
Journal:  Genet Med       Date:  2004 Sep-Oct       Impact factor: 8.822

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  6 in total

Review 1.  Ethical considerations in gene selection for reproductive carrier screening.

Authors:  Lisa Dive; Alison Dalton Archibald; Ainsley J Newson
Journal:  Hum Genet       Date:  2021-08-23       Impact factor: 5.881

2.  Screening for autosomal recessive and X-linked conditions during pregnancy and preconception: a practice resource of the American College of Medical Genetics and Genomics (ACMG).

Authors:  Anthony R Gregg; Mahmoud Aarabi; Susan Klugman; Natalia T Leach; Michael T Bashford; Tamar Goldwaser; Emily Chen; Teresa N Sparks; Honey V Reddi; Aleksandar Rajkovic; Jeffrey S Dungan
Journal:  Genet Med       Date:  2021-07-20       Impact factor: 8.864

3.  Identification of Pathogenic Variant Burden and Selection of Optimal Diagnostic Method Is a Way to Improve Carrier Screening for Autosomal Recessive Diseases.

Authors:  Evgeniia A Sotnikova; Anna V Kiseleva; Vladimir A Kutsenko; Anastasia A Zharikova; Vasily E Ramensky; Mikhail G Divashuk; Yuri V Vyatkin; Marina V Klimushina; Alexandra I Ershova; Karina Z Revazyan; Olga P Skirko; Marija Zaicenoka; Irina A Efimova; Maria S Pokrovskaya; Oksana V Kopylova; Anush M Glechan; Svetlana A Shalnova; Alexey N Meshkov; Oxana M Drapkina
Journal:  J Pers Med       Date:  2022-07-12

4.  Large scale population screening for Duchenne muscular dystrophy-Predictable and unpredictable challenges.

Authors:  Gal Cohen; Atalia Shtorch-Asor; Shay Ben-Shachar; Racheli Goldfarb-Yaacobi; Meirav Kaiser; Revital Rosenfeld; Mika Vinovezky; Dana Irge; Yael Furman; Dafni Reiss; Shira Litz-Philipsborn; Rivka Sukenik-Halevy
Journal:  Prenat Diagn       Date:  2022-07-05       Impact factor: 3.242

5.  Elucidating clinical phenotypic variability associated with the polyT tract and TG repeats in CFTR.

Authors:  Keith Nykamp; Rebecca Truty; Darlene Riethmaier; Julia Wilkinson; Sara L Bristow; Sienna Aguilar; Dana Neitzel; Nicole Faulkner; Swaroop Aradhya
Journal:  Hum Mutat       Date:  2021-07-10       Impact factor: 4.700

6.  One in seven pathogenic variants can be challenging to detect by NGS: an analysis of 450,000 patients with implications for clinical sensitivity and genetic test implementation.

Authors:  Stephen E Lincoln; Tina Hambuch; Justin M Zook; Sara L Bristow; Kathryn Hatchell; Rebecca Truty; Michael Kennemer; Brian H Shirts; Andrew Fellowes; Shimul Chowdhury; Eric W Klee; Shazia Mahamdallie; Megan H Cleveland; Peter M Vallone; Yan Ding; Sheila Seal; Wasanthi DeSilva; Farol L Tomson; Catherine Huang; Russell K Garlick; Nazneen Rahman; Marc Salit; Stephen F Kingsmore; Matthew J Ferber; Swaroop Aradhya; Robert L Nussbaum
Journal:  Genet Med       Date:  2021-05-18       Impact factor: 8.822

  6 in total

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