Literature DB >> 32400038

THE MAKING OF A FOOTPRINT IN PROTEIN FOOTPRINTING: A REVIEW IN HONOR OF MICHAEL L. GROSS.

Alan McKenzie-Coe1, Raquel Shortt1, Lisa M Jones1.   

Abstract

Within the past decade protein footprinting in conjunction with mass spectrometry has become a powerful and versatile means to unravel the higher order structure of proteins. Footprinting-based approaches has demonstrated the capacity to inform on interaction sites and dynamic regions that participate in conformational changes. These findings when set in a biological perspective inform on protein folding/unfolding, protein-protein interactions, and protein-ligand interactions. In this review, we will look at the contribution of Dr. Michael L. Gross to protein footprinting approaches such as hydrogen deuterium exchange mass spectrometry and hydroxyl radical protein footprinting. This review details the development of novel footprinting methods as well as their applications to study higher order protein structure.
© 2020 The Authors. Mass Spectrometry Reviews published by John Wiley & Sons Ltd. Mass Spec Rev. © 2020 The Authors. Mass Spectrometry Reviews published by John Wiley & Sons Ltd.

Entities:  

Keywords:  higher order structure; hydrogen deuterium exchange; hydroxyl radical protein footprinting; protein footprinting

Year:  2020        PMID: 32400038      PMCID: PMC7849054          DOI: 10.1002/mas.21632

Source DB:  PubMed          Journal:  Mass Spectrom Rev        ISSN: 0277-7037            Impact factor:   10.946


  80 in total

1.  Calcium binding to calmodulin. Cooperativity of the calcium-binding sites.

Authors:  S Iida; J D Potter
Journal:  J Biochem       Date:  1986-06       Impact factor: 3.387

Review 2.  Hydroxyl radical-mediated modification of proteins as probes for structural proteomics.

Authors:  Guozhong Xu; Mark R Chance
Journal:  Chem Rev       Date:  2007-08       Impact factor: 60.622

3.  Carboxyl-group footprinting maps the dimerization interface and phosphorylation-induced conformational changes of a membrane-associated tyrosine kinase.

Authors:  Hao Zhang; Wei Shen; Don Rempel; John Monsey; Ilan Vidavsky; Michael L Gross; Ron Bose
Journal:  Mol Cell Proteomics       Date:  2011-03-21       Impact factor: 5.911

4.  Fast photochemical oxidation of proteins (FPOP) maps the epitope of EGFR binding to adnectin.

Authors:  Yuetian Yan; Guodong Chen; Hui Wei; Richard Y-C Huang; Jingjie Mo; Don L Rempel; Adrienne A Tymiak; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2014-09-30       Impact factor: 3.109

Review 5.  Fast photochemical oxidation of proteins (FPOP): A powerful mass spectrometry-based structural proteomics tool.

Authors:  Danté T Johnson; Luciano H Di Stefano; Lisa M Jones
Journal:  J Biol Chem       Date:  2019-07-01       Impact factor: 5.157

6.  Pulsed hydrogen-deuterium exchange mass spectrometry probes conformational changes in amyloid beta (Aβ) peptide aggregation.

Authors:  Ying Zhang; Don L Rempel; Jun Zhang; Anuj K Sharma; Liviu M Mirica; Michael L Gross
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

7.  Hydrogen-Deuterium Exchange and Hydroxyl Radical Footprinting for Mapping Hydrophobic Interactions of Human Bromodomain with a Small Molecule Inhibitor.

Authors:  Ke Sherry Li; Elizabeth T Schaper Bergman; Brett R Beno; Richard Y-C Huang; Ekaterina Deyanova; Guodong Chen; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2019-11-12       Impact factor: 3.109

8.  Effects of physical exercise on insulin absorption in insulin-dependent diabetics. A comparison between human and porcine insulin.

Authors:  E Fernqvist; B Linde; J Ostman; R Gunnarsson
Journal:  Clin Physiol       Date:  1986-12

9.  Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation.

Authors:  Z Zhang; D L Smith
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

10.  Role of B13 Glu in insulin assembly. The hexamer structure of recombinant mutant (B13 Glu-->Gln) insulin.

Authors:  G A Bentley; J Brange; Z Derewenda; E J Dodson; G G Dodson; J Markussen; A J Wilkinson; A Wollmer; B Xiao
Journal:  J Mol Biol       Date:  1992-12-20       Impact factor: 5.469

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