Literature DB >> 32398422

Metagenomic Deep Sequencing to Investigate for an Infectious Etiology of Iridocorneal Endothelial Syndrome.

Plern Sutra1,2,3, Jennifer Rose-Nussbaumer1,2, John A Gonzales1,2, Kaidi Wang1,2, Armin Hinterwirth1, Gerami Seitzman1,2, Michele Bloomer2, Nisha Acharya1,2, Thuy Doan1,2.   

Abstract

PURPOSE: Iridocorneal endothelial (ICE) syndrome is a group of rare ocular conditions that result from abnormal corneal endothelial cells, leading to secondary glaucoma, iris distortions, and corneal edema. The etiology of ICE is unknown, although it has been associated with viral infections, such as herpes simplex virus. In this study, we sought to identify an infectious etiology for ICE using advanced molecular techniques.
METHODS: Metagenomic RNA sequencing (MDS) is a high-throughput sequencing approach that can identify all pathogens in any clinical sample, including RNA viruses. Descemet membrane and aqueous fluid from patients with ICE syndrome were subjected to MDS testing.
RESULTS: Samples from 3 patients with ICE were analyzed. MDS was performed on the aqueous fluid of 3 patients and Descemet membrane and endothelial cell tissue from 1 patient. Viral pathogens were not identified in any of the samples.
CONCLUSIONS: We were unable to identify a viral etiology in the tissues of patients with the Chandler variant of ICE syndrome, although this study was limited by sample size.

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Year:  2020        PMID: 32398422      PMCID: PMC7483698          DOI: 10.1097/ICO.0000000000002368

Source DB:  PubMed          Journal:  Cornea        ISSN: 0277-3740            Impact factor:   3.152


  15 in total

1.  Detection of herpes simplex virus in aqueous humor in iridocorneal endothelial (ICE) syndrome.

Authors:  M J Groh; B Seitz; S Schumacher; G O Naumann
Journal:  Cornea       Date:  1999-05       Impact factor: 2.651

2.  Corneal endothelial function and structure following cryo-injury in the rabbit.

Authors:  J S Minkowski; S P Bartels; F C Delori; S R Lee; K R Kenyon; A H Neufeld
Journal:  Invest Ophthalmol Vis Sci       Date:  1984-12       Impact factor: 4.799

3.  Classification of corneal endothelial disorders based on neural crest origin.

Authors:  C F Bahn; H F Falls; G A Varley; R F Meyer; H F Edelhauser; W M Bourne
Journal:  Ophthalmology       Date:  1984-06       Impact factor: 12.079

4.  The corneal endothelium and the spectrum of essential iris atrophy.

Authors:  D G Campbell; M B Shields; T R Smith
Journal:  Am J Ophthalmol       Date:  1978-09       Impact factor: 5.258

5.  Antibodies to Epstein-Barr virus in iridocorneal endothelial syndrome.

Authors:  C S Tsai; R Ritch; S E Straus; H D Perry; F Y Hsieh
Journal:  Arch Ophthalmol       Date:  1990-11

6.  Pathogenesis of Chandler's syndrome, essential iris atrophy and the Cogan-Reese syndrome. I. Alterations of the corneal endothelium.

Authors:  J A Alvarado; C G Murphy; M Maglio; J Hetherington
Journal:  Invest Ophthalmol Vis Sci       Date:  1986-06       Impact factor: 4.799

7.  Pathogenesis of Chandler's syndrome, essential iris atrophy and the Cogan-Reese syndrome. II. Estimated age at disease onset.

Authors:  J A Alvarado; C G Murphy; R P Juster; J Hetherington
Journal:  Invest Ophthalmol Vis Sci       Date:  1986-06       Impact factor: 4.799

8.  Centrifuge: rapid and sensitive classification of metagenomic sequences.

Authors:  Daehwan Kim; Li Song; Florian P Breitwieser; Steven L Salzberg
Journal:  Genome Res       Date:  2016-10-17       Impact factor: 9.043

9.  Association of Ocular Inflammation and Rubella Virus Persistence.

Authors:  John A Gonzales; Armin Hinterwirth; Jessica Shantha; Kaidi Wang; Lina Zhong; Susie L Cummings; Ying Qian; Michael R Wilson; Nisha R Acharya; Thuy Doan
Journal:  JAMA Ophthalmol       Date:  2019-04-01       Impact factor: 7.389

10.  Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.

Authors:  Thuy Doan; Michael R Wilson; Emily D Crawford; Eric D Chow; Lillian M Khan; Kristeene A Knopp; Brian D O'Donovan; Dongxiang Xia; Jill K Hacker; Jay M Stewart; John A Gonzales; Nisha R Acharya; Joseph L DeRisi
Journal:  Genome Med       Date:  2016-08-25       Impact factor: 11.117

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