Literature DB >> 32398275

Ten Years of the Maize Nested Association Mapping Population: Impact, Limitations, and Future Directions.

Joseph L Gage1,2, Brandon Monier2, Anju Giri2, Edward S Buckler1,2,3.   

Abstract

It has been just over a decade since the release of the maize (Zea mays) Nested Association Mapping (NAM) population. The NAM population has been and continues to be an invaluable resource for the maize genetics community and has yielded insights into the genetic architecture of complex traits. The parental lines have become some of the most well-characterized maize germplasm, and their de novo assemblies were recently made publicly available. As we enter an exciting new stage in maize genomics, this retrospective will summarize the design and intentions behind the NAM population; its application, the discoveries it has enabled, and its influence in other systems; and use the past decade of hindsight to consider whether and how it will remain useful in a new age of genomics.
© 2020 American Society of Plant Biologists. All rights reserved.

Entities:  

Year:  2020        PMID: 32398275      PMCID: PMC7346555          DOI: 10.1105/tpc.19.00951

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  66 in total

1.  Recombination patterns in maize reveal limits to crossover homeostasis.

Authors:  Gaganpreet K Sidhu; Celestia Fang; Mischa A Olson; Matthieu Falque; Olivier C Martin; Wojciech P Pawlowski
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

Review 2.  The genetic theory of adaptation: a brief history.

Authors:  H Allen Orr
Journal:  Nat Rev Genet       Date:  2005-02       Impact factor: 53.242

3.  Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize.

Authors:  Jesse A Poland; Peter J Bradbury; Edward S Buckler; Rebecca J Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

4.  A study of allelic diversity underlying flowering-time adaptation in maize landraces.

Authors:  J Alberto Romero Navarro; Martha Willcox; Juan Burgueño; Cinta Romay; Kelly Swarts; Samuel Trachsel; Ernesto Preciado; Arturo Terron; Humberto Vallejo Delgado; Victor Vidal; Alejandro Ortega; Armando Espinoza Banda; Noel Orlando Gómez Montiel; Ivan Ortiz-Monasterio; Félix San Vicente; Armando Guadarrama Espinoza; Gary Atlin; Peter Wenzl; Sarah Hearne; Edward S Buckler
Journal:  Nat Genet       Date:  2017-02-06       Impact factor: 38.330

5.  Metabolome-Scale Genome-Wide Association Studies Reveal Chemical Diversity and Genetic Control of Maize Specialized Metabolites.

Authors:  Shaoqun Zhou; Karl A Kremling; Nonoy Bandillo; Annett Richter; Ying K Zhang; Kevin R Ahern; Alexander B Artyukhin; Joshua X Hui; Gordon C Younkin; Frank C Schroeder; Edward S Buckler; Georg Jander
Journal:  Plant Cell       Date:  2019-03-28       Impact factor: 11.277

6.  Modelling the genetic architecture of flowering time control in barley through nested association mapping.

Authors:  Andreas Maurer; Vera Draba; Yong Jiang; Florian Schnaithmann; Rajiv Sharma; Erika Schumann; Benjamin Kilian; Jochen Christoph Reif; Klaus Pillen
Journal:  BMC Genomics       Date:  2015-04-12       Impact factor: 3.969

7.  Intraspecific variation of recombination rate in maize.

Authors:  Eva Bauer; Matthieu Falque; Hildrun Walter; Cyril Bauland; Christian Camisan; Laura Campo; Nina Meyer; Nicolas Ranc; Renaud Rincent; Wolfgang Schipprack; Thomas Altmann; Pascal Flament; Albrecht E Melchinger; Monica Menz; Jesús Moreno-González; Milena Ouzunova; Pedro Revilla; Alain Charcosset; Olivier C Martin; Chris-Carolin Schön
Journal:  Genome Biol       Date:  2013       Impact factor: 13.583

Review 8.  Maximizing the potential of multi-parental crop populations.

Authors:  Olufunmilayo Ladejobi; James Elderfield; Keith A Gardner; R Chris Gaynor; John Hickey; Julian M Hibberd; Ian J Mackay; Alison R Bentley
Journal:  Appl Transl Genom       Date:  2016-10-26

9.  TeoNAM: A Nested Association Mapping Population for Domestication and Agronomic Trait Analysis in Maize.

Authors:  Qiuyue Chen; Chin Jian Yang; Alessandra M York; Wei Xue; Lora L Daskalska; Craig A DeValk; Kyle W Krueger; Samuel B Lawton; Bailey G Spiegelberg; Jack M Schnell; Michael A Neumeyer; Joseph S Perry; Aria C Peterson; Brandon Kim; Laura Bergstrom; Liyan Yang; Isaac C Barber; Feng Tian; John F Doebley
Journal:  Genetics       Date:  2019-09-03       Impact factor: 4.562

10.  Comprehensive genotyping of the USA national maize inbred seed bank.

Authors:  Maria C Romay; Mark J Millard; Jeffrey C Glaubitz; Jason A Peiffer; Kelly L Swarts; Terry M Casstevens; Robert J Elshire; Charlotte B Acharya; Sharon E Mitchell; Sherry A Flint-Garcia; Michael D McMullen; James B Holland; Edward S Buckler; Candice A Gardner
Journal:  Genome Biol       Date:  2013-06-11       Impact factor: 13.583

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  16 in total

1.  Enhancing grain-yield-related traits by CRISPR-Cas9 promoter editing of maize CLE genes.

Authors:  Lei Liu; Joseph Gallagher; Edgar Demesa Arevalo; Richelle Chen; Tara Skopelitis; Qingyu Wu; Madelaine Bartlett; David Jackson
Journal:  Nat Plants       Date:  2021-02-22       Impact factor: 15.793

2.  Development of an Australian Bread Wheat Nested Association Mapping Population, a New Genetic Diversity Resource for Breeding under Dry and Hot Climates.

Authors:  Charity Chidzanga; Delphine Fleury; Ute Baumann; Dan Mullan; Sayuri Watanabe; Priyanka Kalambettu; Robert Pontre; James Edwards; Kerrie Forrest; Debbie Wong; Peter Langridge; Ken Chalmers; Melissa Garcia
Journal:  Int J Mol Sci       Date:  2021-04-21       Impact factor: 5.923

Review 3.  The carbon isotopic signature of C4 crops and its applicability in breeding for climate resilience.

Authors:  Stella Eggels; Sonja Blankenagel; Chris-Carolin Schön; Viktoriya Avramova
Journal:  Theor Appl Genet       Date:  2021-02-11       Impact factor: 5.699

4.  Variation in upstream open reading frames contributes to allelic diversity in maize protein abundance.

Authors:  Joseph L Gage; Sujina Mali; Fionn McLoughlin; Merritt Khaipho-Burch; Brandon Monier; Julia Bailey-Serres; Richard D Vierstra; Edward S Buckler
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-29       Impact factor: 12.779

5.  Back to the wild: mining maize (Zea mays L.) disease resistance using advanced breeding tools.

Authors:  Shabir Hussain Wani; Kajal Samantara; Ali Razzaq; Grihalakshmi Kakani; Pardeep Kumar
Journal:  Mol Biol Rep       Date:  2022-01-22       Impact factor: 2.742

6.  Natural genetic variation as a tool for discovery in Caenorhabditis nematodes.

Authors:  Erik C Andersen; Matthew V Rockman
Journal:  Genetics       Date:  2022-01-04       Impact factor: 4.562

Review 7.  Sorghum genetic, genomic, and breeding resources.

Authors:  Zhanguo Xin; Mingli Wang; Hugo E Cuevas; Junping Chen; Melanie Harrison; N Ace Pugh; Geoffrey Morris
Journal:  Planta       Date:  2021-11-05       Impact factor: 4.116

8.  Development of an Aus-Derived Nested Association Mapping (Aus-NAM) Population in Rice.

Authors:  Justine K Kitony; Hidehiko Sunohara; Mikako Tasaki; Jun-Ichi Mori; Akihisa Shimazu; Vincent P Reyes; Hideshi Yasui; Yoshiyuki Yamagata; Atsushi Yoshimura; Masanori Yamasaki; Shunsaku Nishiuchi; Kazuyuki Doi
Journal:  Plants (Basel)       Date:  2021-06-21

9.  DArTseq-Based High-Throughput SilicoDArT and SNP Markers Applied for Association Mapping of Genes Related to Maize Morphology.

Authors:  Agnieszka Tomkowiak; Jan Bocianowski; Julia Spychała; Joanna Grynia; Aleksandra Sobiech; Przemysław Łukasz Kowalczewski
Journal:  Int J Mol Sci       Date:  2021-05-29       Impact factor: 5.923

10.  Exploiting High-Throughput Indoor Phenotyping to Characterize the Founders of a Structured B. napus Breeding Population.

Authors:  Jana Ebersbach; Nazifa Azam Khan; Ian McQuillan; Erin E Higgins; Kyla Horner; Venkat Bandi; Carl Gutwin; Sally Lynne Vail; Steve J Robinson; Isobel A P Parkin
Journal:  Front Plant Sci       Date:  2022-01-05       Impact factor: 5.753

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