| Literature DB >> 32398193 |
K M O'Reilly1,2,3, N C Grassly3, D J Allen4,5,6, M Bannister-Tyrrell7, A Cameron8, A I Carrion Martin6,9, M Ramsay6, R Pebody6, M Zambon6.
Abstract
Surveillance for acute flaccid paralysis (AFP) cases are essential for polio eradication. However, as most poliovirus infections are asymptomatic and some regions of the world are inaccessible, additional surveillance tools require development. Within England and Wales, we demonstrate how inclusion of environmental sampling (ENV) improves the sensitivity of detecting both wild and vaccine-derived polioviruses (VDPVs) when compared to current surveillance. Statistical modelling was used to estimate the spatial risk of wild and VDPV importation and circulation in England and Wales. We estimate the sensitivity of each surveillance mode to detect poliovirus and the probability of being free from poliovirus, defined as being below a pre-specified prevalence of infection. Poliovirus risk was higher within local authorities in Manchester, Birmingham, Bradford and London. The sensitivity of detecting wild poliovirus within a given month using AFP and enterovirus surveillance was estimated to be 0.096 (95% CI 0.055-0.134). Inclusion of ENV in the three highest risk local authorities and a site in London increased surveillance sensitivity to 0.192 (95% CI 0.191-0.193). The sensitivity of ENV strategies can be compared using the framework by varying sites and the frequency of sampling. The probability of being free from poliovirus slowly increased from the date of the last case in 1993. ENV within areas thought to have the highest risk improves detection of poliovirus, and has the potential to improve confidence in the polio-free status of England and Wales and detect VDPVs.Entities:
Keywords: Polio; surveillance; surveillance system; virology (human) and epidemiology
Mesh:
Year: 2020 PMID: 32398193 PMCID: PMC7379320 DOI: 10.1017/S0950268820001004
Source DB: PubMed Journal: Epidemiol Infect ISSN: 0950-2688 Impact factor: 2.451
Countries that have reported either wild of VDPVs between 2015 and 2017 and the reported number of movements between England and Wales
| Country | Population size (million) | Cases of wild poliovirus (2015–2017) | Incidence of wild poliovirus (2015–2017) (per million per year) | Cases of VDPVs (2015–2017) | Incidence of VDPVs (2015–2017) (per million per year) | Combined incidence (per million per year) | Travel to England and Wales (2016) | Visitors from England and Wales (2016) |
|---|---|---|---|---|---|---|---|---|
| Afghanistan | 34.6 | 47 | 0.45 | 0 | 0 | ND | 15 351 | |
| Pakistan | 193.2 | 82 | 0.14 | 3 | 0.01 | 65 776 | 552 833 | |
| Nigeria | 186 | 4 | 0.01 | 2 | 0 | 0.01 | 100 904 | 183 807 |
| Madagascar | 24.9 | 0 | 0 | 10 | 0.13 | 0.13 | ND | 8289 |
| Laos | 6.8 | 0 | 0 | 11 | 0.54 | 0.54 | ND | 3032 |
| DRC | 78.7 | 0 | 0 | 22 | 0.09 | 0.09 | ND | ND |
| Syria | 18.4 | 0 | 0 | 74 | 1.34 | 1.34 | ND | ND |
| Guinea | 12.1 | 0 | 0 | 7 | 0.19 | 0.19 | ND | ND |
| Myanmar | 52.9 | 0 | 0 | 2 | 0.01 | 0.01 | ND | 15 287 |
ND, no data, presumed to be very low.
Fig. 1.Scenario tree structure for acute flaccid paralysis (AFP), enterovirus (ENT) and environmental (ENV) surveillance in England and Wales. Dashed circles indicate category nodes, squares indicate infection nodes, circles indicate detection nodes and hexagons indicate outcome nodes.
Estimates of surveillance probabilities used in the scenario tree analysis
| Surveillance | AFP | ENT | ENV | |||
|---|---|---|---|---|---|---|
| Model inputs | Probability | Estimate (95% CI) | Probability | Estimate (95% CI) | Probability | Estimate (95% CI) |
| Infection – wild | Pr(caseAFP) | 0.00531 (0.00412–0.00668) | Pr(caseENT) | 5.29×10−5 (4.07×10−5–6.74×10−5) | Pr(shedding) | 0.80 |
| Infection – VDPV | 0.000567 (0.000281–0.000933) | As above | 0.80 | |||
| Notification | Pr(notifAFP) | 0.9 (0.6–0.99) | Pr(notifENT) | 0.9 (0.6–0.99) | Pr(catchment) | varied |
| Sampling | Pr(sampleAFP) | 0.8 (0.5–0.95) | Pr(sampleENT) | 0.5 (0.1–0.9) | Pr(sample) | 0.80 (0.5–0.90) |
| Test | Pr(testAFP) | 0.97 (0.95–1.00) | Pr(testENT) | 0.97 (0.95–1.00) | Pr(testENV) | 0.97 (0.95–1.00) |
The rationale behind the selected values are described in more detail in the Supplementary Material.
Monthly sampling.
Fig. 2.Estimated risk of poliovirus circulation in local authorities within (A) England and Wales, and (B) London. (C) The estimated risk within each local authority is ordered by reducing risk and compared to the cumulative percentage of the population to illustrate that 50% of estimated risk is focussed within <20% of the population.
Summary of the Local Authorities that constitute over 50% of the estimated risk of poliovirus circulation in England and Wales
| Local Authority | County | Pentavalent coverage | Associated Water Company | Pr(circulation) | % Total estimated risk | Population size |
|---|---|---|---|---|---|---|
| Birmingham District (A) | West Midlands | 94.8 | Severn Trent – Minworth | 0.905 | 7.0% | 1 073 045 |
| Manchester District (A) | Greater Manchester | 95.9 | United Utilities – Davyhulme | 0.924 | 5.3% | 503 127 |
| Bradford District (A) | West Yorkshire | 97.2 | Yorkshire Water – Esholt | 0.947 | 4.6% | 522 452 |
| Newham (B) | London Borough | 94.2 | Thames Water – Beckton | 0.896 | 3.8% | 307 984 |
| Redbridge (B) | London Borough | 95.2 | Thames Water – Beckton | 0.912 | 2.6% | 278 970 |
| Ealing (C) | London Borough | 95.9 | Thames Water – Mogden | 0.923 | 2.4% | 338 449 |
| Leeds District (C) | West Yorkshire | 97.1 | Yorkshire Water - | 0.945 | 2.3% | 751 485 |
| Waltham Forest (B) | London Borough | 92.1 | Thames Water – Beckton | 0.864 | 2.2% | 258 249 |
| Luton (C) | Luton | 96.3 | Thames Water | 0.932 | 1.9% | 203 201 |
| City of Nottingham (C) | Nottingham | 94.7 | Severn Trent – Stoke Bardolph | 0.904 | 1.9% | 305 680 |
| Hounslow (C) | London Borough | 89.7 | Thames Water – Mogden | 0.830 | 1.9% | 253 957 |
| Brent (C) | London Borough | 93.1 | Thames Water – Mogden | 0.879 | 1.8% | 311 215 |
| Sheffield District (C) | South Yorkshire | 96.2 | Yorkshire Water | 0.929 | 1.5% | 552 698 |
| Slough (C) | Outer London | 94.5 | Thames Water | 0.901 | 1.5% | 140 205 |
| Hillingdon (C) | London Borough | 95.1 | Thames Water – Mogden | 0.911 | 1.5% | 273 936 |
| City of Westminster (B) | London Borough | 75.9 | Thames Water – Beckton | 0.675 | 1.4% | 219 396 |
| Caerdydd – Cardiff (C) | Wales | 95.0 | Glas Cymru | 0.909 | 1.4% | 346 090 |
| Kirklees District (C) | West Yorkshire | 98.1 | Yorkshire Water | 0.963 | 1.3% | 422 458 |
| Barnet (C) | London Borough | 92.1 | Thames Water – Mogden | 0.864 | 1.3% | 356 386 |
| Greenwich (C) | London Borough | 93.4 | Thames Water – Crossness | 0.883 | 1.2% | 254 557 |
| Barking and Dagenham (B) | London Borough | 90.5 | Thames Water – Beckton | 0.840 | 1.2% | 185 911 |
The parentheses A, B and C refer to the ENV sampling strategies described in the results.
LAs where the pentavalent coverage is below the national average (96.3%).
Where possible the likely sewage treatment works is given.
Fig. 3.Estimates of the probability of being poliovirus free within England and Wales. The dark brown line is the median estimate and the lighter brown lines are the 2.5 and 97.5 percentile estimates. The arrow indicates when enterovirus surveillance was introduced. The dashed line indicates a 0.95 probability, which was reached by early 1996 for the wild virus analysis (VDPV is shown as a comparator).