Literature DB >> 32396862

ADAR1-Dependent RNA Editing Promotes MET and iPSC Reprogramming by Alleviating ER Stress.

Diana Guallar1, Alejandro Fuentes-Iglesias2, Yara Souto2, Cristina Ameneiro2, Oscar Freire-Agulleiro3, Jose Angel Pardavila2, Adriana Escudero2, Vera Garcia-Outeiral2, Tiago Moreira4, Carmen Saenz5, Heng Xiong6, Dongbing Liu6, Shidi Xiao7, Yong Hou6, Kui Wu6, Daniel Torrecilla4, Jochen C Hartner8, Miguel G Blanco9, Leo J Lee10, Miguel López3, Carl R Walkley11, Jianlong Wang12, Miguel Fidalgo13.   

Abstract

RNA editing of adenosine to inosine (A to I) is catalyzed by ADAR1 and dramatically alters the cellular transcriptome, although its functional roles in somatic cell reprogramming are largely unexplored. Here, we show that loss of ADAR1-mediated A-to-I editing disrupts mesenchymal-to-epithelial transition (MET) during induced pluripotent stem cell (iPSC) reprogramming and impedes acquisition of induced pluripotency. Using chemical and genetic approaches, we show that absence of ADAR1-dependent RNA editing induces aberrant innate immune responses through the double-stranded RNA (dsRNA) sensor MDA5, unleashing endoplasmic reticulum (ER) stress and hindering epithelial fate acquisition. We found that A-to-I editing impedes MDA5 sensing and sequestration of dsRNAs encoding membrane proteins, which promote ER homeostasis by activating the PERK-dependent unfolded protein response pathway to consequently facilitate MET. This study therefore establishes a critical role for ADAR1 and its A-to-I editing activity during cell fate transitions and delineates a key regulatory layer underlying MET to control efficient reprogramming.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ADAR1; ER stress; MET; RNA A-to-I editing; UPR; iPSC; innate immune response; pluripotency; somatic cell reprogramming; subcellular localization

Mesh:

Substances:

Year:  2020        PMID: 32396862      PMCID: PMC7415614          DOI: 10.1016/j.stem.2020.04.016

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  89 in total

1.  Large-scale identification of secreted and membrane-associated gene products using DNA microarrays.

Authors:  M Diehn; M B Eisen; D Botstein; P O Brown
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  A mesenchymal-to-epithelial transition initiates and is required for the nuclear reprogramming of mouse fibroblasts.

Authors:  Ronghui Li; Jialiang Liang; Su Ni; Ting Zhou; Xiaobing Qing; Huapeng Li; Wenzhi He; Jiekai Chen; Feng Li; Qiang Zhuang; Baoming Qin; Jianyong Xu; Wen Li; Jiayin Yang; Yi Gan; Dajiang Qin; Shipeng Feng; Hong Song; Dongshan Yang; Biliang Zhang; Lingwen Zeng; Liangxue Lai; Miguel Angel Esteban; Duanqing Pei
Journal:  Cell Stem Cell       Date:  2010-06-17       Impact factor: 24.633

3.  A selective inhibitor of eIF2alpha dephosphorylation protects cells from ER stress.

Authors:  Michael Boyce; Kevin F Bryant; Céline Jousse; Kai Long; Heather P Harding; Donalyn Scheuner; Randal J Kaufman; Dawei Ma; Donald M Coen; David Ron; Junying Yuan
Journal:  Science       Date:  2005-02-11       Impact factor: 47.728

4.  The oncogene c-Jun impedes somatic cell reprogramming.

Authors:  Jing Liu; Qingkai Han; Tianran Peng; Meixiu Peng; Bei Wei; Dongwei Li; Xiaoshan Wang; Shengyong Yu; Jiaqi Yang; Shangtao Cao; Kaimeng Huang; Andrew Paul Hutchins; He Liu; Junqi Kuang; Zhiwei Zhou; Jing Chen; Haoyu Wu; Lin Guo; Yongqiang Chen; You Chen; Xuejia Li; Hongling Wu; Baojian Liao; Wei He; Hong Song; Hongjie Yao; Guangjin Pan; Jiekai Chen; Duanqing Pei
Journal:  Nat Cell Biol       Date:  2015-06-22       Impact factor: 28.824

5.  Reprogramming of human peripheral blood cells to induced pluripotent stem cells.

Authors:  Judith Staerk; Meelad M Dawlaty; Qing Gao; Dorothea Maetzel; Jacob Hanna; Cesar A Sommer; Gustavo Mostoslavsky; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2010-07-02       Impact factor: 24.633

Review 6.  Epithelial-Mesenchymal Plasticity in Cancer Progression and Metastasis.

Authors:  Wei Lu; Yibin Kang
Journal:  Dev Cell       Date:  2019-05-06       Impact factor: 12.270

7.  Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs.

Authors:  Cornelia Vesely; Stefanie Tauber; Fritz J Sedlazeck; Arndt von Haeseler; Michael F Jantsch
Journal:  Genome Res       Date:  2012-02-06       Impact factor: 9.043

8.  Genomic analysis of ADAR1 binding and its involvement in multiple RNA processing pathways.

Authors:  Jae Hoon Bahn; Jaegyoon Ahn; Xianzhi Lin; Qing Zhang; Jae-Hyung Lee; Mete Civelek; Xinshu Xiao
Journal:  Nat Commun       Date:  2015-03-09       Impact factor: 14.919

9.  Structure-mediated modulation of mRNA abundance by A-to-I editing.

Authors:  Anneke Brümmer; Yun Yang; Tracey W Chan; Xinshu Xiao
Journal:  Nat Commun       Date:  2017-11-02       Impact factor: 14.919

10.  RADAR: a rigorously annotated database of A-to-I RNA editing.

Authors:  Gokul Ramaswami; Jin Billy Li
Journal:  Nucleic Acids Res       Date:  2013-10-25       Impact factor: 16.971

View more
  9 in total

1.  An Optimized Immunoprecipitation Protocol for Assessing Protein-RNA Interactions In Vitro.

Authors:  Alejandro Fuentes-Iglesias; Vera Garcia-Outeiral; Jose Angel Pardavila; Jianlong Wang; Miguel Fidalgo; Diana Guallar
Journal:  STAR Protoc       Date:  2020-08-26

2.  Detecting and Modulating ER Stress to Improve Generation of Induced Pluripotent Stem Cells.

Authors:  Alejandro Fuentes-Iglesias; Cristina Ameneiro; Diana Guallar; Miguel Fidalgo
Journal:  Methods Mol Biol       Date:  2022

3.  Inflammation-driven deaminase deregulation fuels human pre-leukemia stem cell evolution.

Authors:  Qingfei Jiang; Jane Isquith; Luisa Ladel; Adam Mark; Frida Holm; Cayla Mason; Yudou He; Phoebe Mondala; Isabelle Oliver; Jessica Pham; Wenxue Ma; Eduardo Reynoso; Shawn Ali; Isabella Jamieson Morris; Raymond Diep; Chanond Nasamran; Guorong Xu; Roman Sasik; Sara Brin Rosenthal; Amanda Birmingham; Sanja Coso; Gabriel Pineda; Leslie Crews; Mary E Donohoe; J Craig Venter; Thomas Whisenant; Ruben A Mesa; Ludmil B Alexandrov; Kathleen M Fisch; Catriona Jamieson
Journal:  Cell Rep       Date:  2021-01-26       Impact factor: 9.423

Review 4.  Sensing Stemness.

Authors:  Teresa V Bowman; Eirini Trompouki
Journal:  Curr Stem Cell Rep       Date:  2021-10-06

5.  RNA Editing-Associated Post-Transcriptional Gene Regulation in Rheumatoid Arthritis.

Authors:  Yashoda Ghanekar; Subhashini Sadasivam
Journal:  Bioinform Biol Insights       Date:  2022-04-19

Review 6.  Unifying Different Cancer Theories in a Unique Tumour Model: Chronic Inflammation and Deaminases as Meeting Points.

Authors:  Pablo Hernández-Camarero; Elena López-Ruiz; Juan Antonio Marchal; Macarena Perán
Journal:  Int J Mol Sci       Date:  2022-08-05       Impact factor: 6.208

7.  Adenosine-to-inosine editing of endogenous Z-form RNA by the deaminase ADAR1 prevents spontaneous MAVS-dependent type I interferon responses.

Authors:  Qiannan Tang; Rachel E Rigby; George R Young; Astrid Korning Hvidt; Tanja Davis; Tiong Kit Tan; Anne Bridgeman; Alain R Townsend; George Kassiotis; Jan Rehwinkel
Journal:  Immunity       Date:  2021-09-14       Impact factor: 31.745

8.  Surf4 facilitates reprogramming by activating the cellular response to endoplasmic reticulum stress.

Authors:  Li Wu; Shengxiang He; Wen Ye; Jiacheng Shen; Kun Zhao; Yanping Zhang; Ran Zhang; Junhao Wei; Shuyuan Cao; Kang Chen; Rongrong Le; Chenxiang Xi; Xiaochen Kou; Yanhong Zhao; Hong Wang; Lan Kang; Shaorong Gao
Journal:  Cell Prolif       Date:  2021-09-28       Impact factor: 6.831

9.  Influence of feeder cells on transcriptomic analysis of pluripotent stem cells.

Authors:  Haifeng Wan; Rui Fu; Man Tong; Yukai Wang; Libin Wang; Siqi Wang; Ying Zhang; Wei Li; Xiu-Jie Wang; Guihai Feng
Journal:  Cell Prolif       Date:  2022-01-21       Impact factor: 6.831

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.