Literature DB >> 32392124

Microbial genomics amidst the Arctic crisis.

Arwyn Edwards1, Karen A Cameron1, Joseph M Cook1, Aliyah R Debbonaire1, Eleanor Furness1, Melanie C Hay1, Sara M E Rassner1.   

Abstract

The Arctic is warming - fast. Microbes in the Arctic play pivotal roles in feedbacks that magnify the impacts of Arctic change. Understanding the genome evolution, diversity and dynamics of Arctic microbes can provide insights relevant for both fundamental microbiology and interdisciplinary Arctic science. Within this synthesis, we highlight four key areas where genomic insights to the microbial dimensions of Arctic change are urgently required: the changing Arctic Ocean, greenhouse gas release from the thawing permafrost, 'biological darkening' of glacial surfaces, and human activities within the Arctic. Furthermore, we identify four principal challenges that provide opportunities for timely innovation in Arctic microbial genomics. These range from insufficient genomic data to develop unifying concepts or model organisms for Arctic microbiology to challenges in gaining authentic insights to the structure and function of low-biomass microbiota and integration of data on the causes and consequences of microbial feedbacks across scales. We contend that our insights to date on the genomics of Arctic microbes are limited in these key areas, and we identify priorities and new ways of working to help ensure microbial genomics is in the vanguard of the scientific response to the Arctic crisis.

Entities:  

Keywords:  Arctic; climate change; microbial genomics; psychrophiles

Mesh:

Year:  2020        PMID: 32392124      PMCID: PMC7371112          DOI: 10.1099/mgen.0.000375

Source DB:  PubMed          Journal:  Microb Genom        ISSN: 2057-5858


  139 in total

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3.  Patchy field sampling biases understanding of climate change impacts across the Arctic.

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Journal:  Nat Ecol Evol       Date:  2018-07-16       Impact factor: 15.460

4.  Community fingerprinting in a sequencing world.

Authors:  Josie van Dorst; Andrew Bissett; Anne S Palmer; Mark Brown; Ian Snape; Jonathan S Stark; Ben Raymond; John McKinlay; Mukan Ji; Tristrom Winsley; Belinda C Ferrari
Journal:  FEMS Microbiol Ecol       Date:  2014-03-21       Impact factor: 4.194

5.  Diversity and potential sources of microbiota associated with snow on western portions of the Greenland Ice Sheet.

Authors:  Karen A Cameron; Birgit Hagedorn; Markus Dieser; Brent C Christner; Kyla Choquette; Ronald Sletten; Byron Crump; Colleen Kellogg; Karen Junge
Journal:  Environ Microbiol       Date:  2014-04-04       Impact factor: 5.491

6.  Taxon interactions control the distributions of cryoconite bacteria colonizing a High Arctic ice cap.

Authors:  Jarishma K Gokul; Andrew J Hodson; Eli R Saetnan; Tristram D L Irvine-Fynn; Philippa J Westall; Andrew P Detheridge; Nozomu Takeuchi; Jennifer Bussell; Luis A J Mur; Arwyn Edwards
Journal:  Mol Ecol       Date:  2016-07-02       Impact factor: 6.185

7.  Illuminating the dynamic rare biosphere of the Greenland Ice Sheet's Dark Zone.

Authors:  Jarishma K Gokul; Karen A Cameron; Tristram D L Irvine-Fynn; Joseph M Cook; Alun Hubbard; Marek Stibal; Matt Hegarty; Luis A J Mur; Arwyn Edwards
Journal:  FEMS Microbiol Ecol       Date:  2019-12-01       Impact factor: 4.194

8.  Abundance determines the functional role of bacterial phylotypes in complex communities.

Authors:  Damian W Rivett; Thomas Bell
Journal:  Nat Microbiol       Date:  2018-06-18       Impact factor: 17.745

9.  Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria.

Authors:  David Colatriano; Patricia Q Tran; Celine Guéguen; William J Williams; Connie Lovejoy; David A Walsh
Journal:  Commun Biol       Date:  2018-07-05

10.  Host-linked soil viral ecology along a permafrost thaw gradient.

Authors:  Joanne B Emerson; Simon Roux; Jennifer R Brum; Benjamin Bolduc; Ben J Woodcroft; Ho Bin Jang; Caitlin M Singleton; Lindsey M Solden; Adrian E Naas; Joel A Boyd; Suzanne B Hodgkins; Rachel M Wilson; Gareth Trubl; Changsheng Li; Steve Frolking; Phillip B Pope; Kelly C Wrighton; Patrick M Crill; Jeffrey P Chanton; Scott R Saleska; Gene W Tyson; Virginia I Rich; Matthew B Sullivan
Journal:  Nat Microbiol       Date:  2018-07-16       Impact factor: 17.745

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  5 in total

1.  Polar Cryoconite Associated Microbiota Is Dominated by Hemispheric Specialist Genera.

Authors:  Jasmin L Millar; Elizabeth A Bagshaw; Arwyn Edwards; Ewa A Poniecka; Anne D Jungblut
Journal:  Front Microbiol       Date:  2021-11-25       Impact factor: 5.640

2.  MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes.

Authors:  Catherine Maggiori; Isabelle Raymond-Bouchard; Laura Brennan; David Touchette; Lyle Whyte
Journal:  Sci Rep       Date:  2021-10-26       Impact factor: 4.996

3.  Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light-harvesting mechanisms in glacier cryoconite.

Authors:  Takumi Murakami; Nozomu Takeuchi; Hiroshi Mori; Yuu Hirose; Arwyn Edwards; Tristram Irvine-Fynn; Zhongqin Li; Satoshi Ishii; Takahiro Segawa
Journal:  Microbiome       Date:  2022-03-23       Impact factor: 14.650

4.  Microbial Community Changes in 26,500-Year-Old Thawing Permafrost.

Authors:  Maria Scheel; Athanasios Zervas; Carsten S Jacobsen; Torben R Christensen
Journal:  Front Microbiol       Date:  2022-03-24       Impact factor: 5.640

5.  Editorial: Digitizing frozen earth-revealing microbial diversity and physiology in the cryobiosphere through "omics" tools, volume II.

Authors:  Anne D Jungblut; David Velazquez; Samuel Cirés; Julia Kleinteich; Krishnan Kottekkatu Padinchati; Birgit Sattler; Jérôme Comte
Journal:  Front Microbiol       Date:  2022-09-30       Impact factor: 6.064

  5 in total

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