Literature DB >> 32387625

The Bayesian Virtual Epileptic Patient: A probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread.

M Hashemi1, A N Vattikonda2, V Sip2, M Guye3, F Bartolomei4, M M Woodman2, V K Jirsa5.   

Abstract

Despite the importance and frequent use of Bayesian frameworks in brain network modeling for parameter inference and model prediction, the advanced sampling algorithms implemented in probabilistic programming languages to overcome the inference difficulties have received relatively little attention in this context. In this technical note, we propose a probabilistic framework, namely the Bayesian Virtual Epileptic Patient (BVEP), which relies on the fusion of structural data of individuals to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread. To invert the individualized whole-brain model employed in this study, we use the recently developed algorithms known as No-U-Turn Sampler (NUTS) as well as Automatic Differentiation Variational Inference (ADVI). Our results indicate that NUTS and ADVI accurately estimate the degree of epileptogenicity of brain regions, therefore, the hypothetical brain areas responsible for the seizure initiation and propagation, while the convergence diagnostics and posterior behavior analysis validate the reliability of the estimations. Moreover, we illustrate the efficiency of the transformed non-centered parameters in comparison to centered form of parameterization. The Bayesian framework used in this work proposes an appropriate patient-specific strategy for estimating the epileptogenicity of the brain regions to improve outcome after epilepsy surgery.
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bayesian inference; Epileptic seizures; Epileptogenicity; Personalized brain network model

Mesh:

Year:  2020        PMID: 32387625     DOI: 10.1016/j.neuroimage.2020.116839

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  14 in total

1.  Multiple sources of fast traveling waves during human seizures: resolving a controversy.

Authors:  Emily D Schlafly; François A Marshall; Edward M Merricks; Uri T Eden; Sydney S Cash; Catherine A Schevon; Mark A Kramer
Journal:  J Neurosci       Date:  2022-07-29       Impact factor: 6.709

2.  Probabilistic landscape of seizure semiology localizing values.

Authors:  Ali Alim-Marvasti; Gloria Romagnoli; Karan Dahele; Hadi Modarres; Fernando Pérez-García; Rachel Sparks; Sébastien Ourselin; Matthew J Clarkson; Fahmida Chowdhury; Beate Diehl; John S Duncan
Journal:  Brain Commun       Date:  2022-05-19

3.  Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography.

Authors:  Viktor Sip; Meysam Hashemi; Anirudh N Vattikonda; Marmaduke M Woodman; Huifang Wang; Julia Scholly; Samuel Medina Villalon; Maxime Guye; Fabrice Bartolomei; Viktor K Jirsa
Journal:  PLoS Comput Biol       Date:  2021-02-17       Impact factor: 4.475

4.  Computational modeling of seizure spread on a cortical surface.

Authors:  Viktor Sip; Maxime Guye; Fabrice Bartolomei; Viktor Jirsa
Journal:  J Comput Neurosci       Date:  2021-10-23       Impact factor: 1.621

5.  Towards an efficient validation of dynamical whole-brain models.

Authors:  Kevin J Wischnewski; Simon B Eickhoff; Viktor K Jirsa; Oleksandr V Popovych
Journal:  Sci Rep       Date:  2022-03-14       Impact factor: 4.379

6.  Linking Brain Structure, Activity, and Cognitive Function through Computation.

Authors:  Katrin Amunts; Javier DeFelipe; Cyriel Pennartz; Alain Destexhe; Michele Migliore; Philippe Ryvlin; Steve Furber; Alois Knoll; Lise Bitsch; Jan G Bjaalie; Yannis Ioannidis; Thomas Lippert; Maria V Sanchez-Vives; Rainer Goebel; Viktor Jirsa
Journal:  eNeuro       Date:  2022-03-11

7.  Epidemic models characterize seizure propagation and the effects of epilepsy surgery in individualized brain networks based on MEG and invasive EEG recordings.

Authors:  Ana P Millán; Elisabeth C W van Straaten; Cornelis J Stam; Ida A Nissen; Sander Idema; Johannes C Baayen; Piet Van Mieghem; Arjan Hillebrand
Journal:  Sci Rep       Date:  2022-03-08       Impact factor: 4.379

8.  Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy.

Authors:  Julie Courtiol; Maxime Guye; Fabrice Bartolomei; Spase Petkoski; Viktor K Jirsa
Journal:  J Neurosci       Date:  2020-06-08       Impact factor: 6.167

9.  Identifying spatio-temporal seizure propagation patterns in epilepsy using Bayesian inference.

Authors:  Anirudh N Vattikonda; Meysam Hashemi; Viktor Sip; Marmaduke M Woodman; Fabrice Bartolomei; Viktor K Jirsa
Journal:  Commun Biol       Date:  2021-11-01

10.  Adiabatic dynamic causal modelling.

Authors:  Amirhossein Jafarian; Peter Zeidman; Rob C Wykes; Matthew Walker; Karl J Friston
Journal:  Neuroimage       Date:  2021-06-08       Impact factor: 6.556

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