Literature DB >> 32385162

Spatiotemporal regulation of PEDF signaling by type I collagen remodeling.

Kazuki Kawahara1, Takuya Yoshida1, Takahiro Maruno2, Hiroya Oki1, Tadayasu Ohkubo1, Takaki Koide3,4, Yuji Kobayashi5.   

Abstract

Dynamic remodeling of the extracellular matrix affects many cellular processes, either directly or indirectly, through the regulation of soluble ligands; however, the mechanistic details of this process remain largely unknown. Here we propose that type I collagen remodeling regulates the receptor-binding activity of pigment epithelium-derived factor (PEDF), a widely expressed secreted glycoprotein that has multiple important biological functions in tissue and organ homeostasis. We determined the crystal structure of PEDF in complex with a disulfide cross-linked heterotrimeric collagen peptide, in which the α(I) chain segments-each containing the respective PEDF-binding region (residues 930 to 938)-are assembled with an α2α1α1 staggered configuration. The complex structure revealed that PEDF specifically interacts with a unique amphiphilic sequence, KGHRGFSGL, of the type I collagen α1 chain, with its proposed receptor-binding sites buried extensively. Molecular docking demonstrated that the PEDF-binding surface of type I collagen contains the cross-link-susceptible Lys930 residue of the α1 chain and provides a good foothold for stable docking with the α1(I) N-telopeptide of an adjacent triple helix in the fibril. Therefore, the binding surface is completely inaccessible if intermolecular crosslinking between two crosslink-susceptible lysyl residues, Lys9 in the N-telopeptide and Lys930, is present. These structural analyses demonstrate that PEDF molecules, once sequestered around newly synthesized pericellular collagen fibrils, are gradually liberated as collagen crosslinking increases, making them accessible for interaction with their target cell surface receptors in a spatiotemporally regulated manner.

Entities:  

Year:  2020        PMID: 32385162      PMCID: PMC7260941          DOI: 10.1073/pnas.2004034117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Mapping the type I collagen-binding site on pigment epithelium-derived factor. Implications for its antiangiogenic activity.

Authors:  Christina Meyer; Luigi Notari; S Patricia Becerra
Journal:  J Biol Chem       Date:  2002-09-16       Impact factor: 5.157

2.  Glycosylation and cross-linking in bone type I collagen.

Authors:  Masahiko Terajima; Irina Perdivara; Marnisa Sricholpech; Yoshizumi Deguchi; Nancy Pleshko; Kenneth B Tomer; Mitsuo Yamauchi
Journal:  J Biol Chem       Date:  2014-06-23       Impact factor: 5.157

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Lysyl oxidase is essential for hypoxia-induced metastasis.

Authors:  Janine T Erler; Kevin L Bennewith; Monica Nicolau; Nadja Dornhöfer; Christina Kong; Quynh-Thu Le; Jen-Tsan Ashley Chi; Stefanie S Jeffrey; Amato J Giaccia
Journal:  Nature       Date:  2006-04-27       Impact factor: 49.962

Review 5.  Collagen structure: new tricks from a very old dog.

Authors:  Jordi Bella
Journal:  Biochem J       Date:  2016-04-15       Impact factor: 3.857

6.  The high resolution crystal structure of the human tumor suppressor maspin reveals a novel conformational switch in the G-helix.

Authors:  Ruby H P Law; James A Irving; Ashley M Buckle; Katya Ruzyla; Marguerite Buzza; Tanya A Bashtannyk-Puhalovich; Travis C Beddoe; Kim Nguyen; D Margaret Worrall; Stephen P Bottomley; Phillip I Bird; Jamie Rossjohn; James C Whisstock
Journal:  J Biol Chem       Date:  2005-03-10       Impact factor: 5.157

7.  Solution conformation of the type I collagen alpha-1 chain N-telopeptide studied by 1H NMR spectroscopy.

Authors:  A Otter; G Kotovych; P G Scott
Journal:  Biochemistry       Date:  1989-10-03       Impact factor: 3.162

8.  Involvement of the collagen I-binding motif in the anti-angiogenic activity of pigment epithelium-derived factor.

Authors:  Jun Hosomichi; Norihisa Yasui; Takaki Koide; Kunimichi Soma; Ikuo Morita
Journal:  Biochem Biophys Res Commun       Date:  2005-09-30       Impact factor: 3.575

9.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

10.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22
View more
  3 in total

1.  The Thermal Stability of the Collagen Triple Helix Is Tuned According to the Environmental Temperature.

Authors:  Kazunori K Fujii; Yuki Taga; Yusuke K Takagi; Ryo Masuda; Shunji Hattori; Takaki Koide
Journal:  Int J Mol Sci       Date:  2022-02-12       Impact factor: 5.923

2.  Synthetic Collagen-like Polymer That Undergoes a Sol-Gel Transition Triggered by O-N Acyl Migration at Physiological pH.

Authors:  Shinichiro F Ichise; Takaki Koide
Journal:  Int J Mol Sci       Date:  2022-01-29       Impact factor: 5.923

Review 3.  Delivery Systems of Retinoprotective Proteins in the Retina.

Authors:  Ivan T Rebustini; Alexandra Bernardo-Colón; Alejandra Isasi Nalvarte; S Patricia Becerra
Journal:  Int J Mol Sci       Date:  2021-05-19       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.