Literature DB >> 32382995

A comparative analysis of genetic hearing loss phenotypes in European/American and Japanese populations.

W Daniel Walls1, Hideaki Moteki2, Taylor R Thomas1, Shin-Ya Nishio2, Hidekane Yoshimura2, Yoichiro Iwasa2, Kathy L Frees1, Carla J Nishimura1, Hela Azaiez1, Kevin T Booth1,3, Robert J Marini1, Diana L Kolbe1, A Monique Weaver1, Amanda M Schaefer1, Kai Wang4, Terry A Braun5, Shin-Ichi Usami2, Peter G Barr-Gillespie6, Guy P Richardson7, Richard J Smith8,9,10, Thomas L Casavant5,11,12.   

Abstract

We present detailed comparative analyses to assess population-level differences in patterns of genetic deafness between European/American and Japanese cohorts with non-syndromic hearing loss. One thousand eighty-three audiometric test results (921 European/American and 162 Japanese) from members of 168 families (48 European/American and 120 Japanese) with non-syndromic hearing loss secondary to pathogenic variants in one of three genes (KCNQ4, TECTA, WFS1) were studied. Audioprofile characteristics, specific mutation types, and protein domains were considered in the comparative analyses. Our findings support differences in audioprofiles driven by both mutation type (non-truncating vs. truncating) and ethnic background. The former finding confirms data that ascribe a phenotypic consequence to different mutation types in KCNQ4; the latter finding suggests that there are ethnic-specific effects (genetic and/or environmental) that impact gene-specific audioprofiles for TECTA and WFS1. Identifying the drivers of ethnic differences will refine our understanding of phenotype-genotype relationships and the biology of hearing and deafness.

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Year:  2020        PMID: 32382995      PMCID: PMC7487054          DOI: 10.1007/s00439-020-02174-y

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  24 in total

Review 1.  Congenital hearing loss.

Authors:  Anna M H Korver; Richard J H Smith; Guy Van Camp; Mark R Schleiss; Maria A K Bitner-Glindzicz; Lawrence R Lustig; Shin-Ichi Usami; An N Boudewyns
Journal:  Nat Rev Dis Primers       Date:  2017-01-12       Impact factor: 52.329

2.  Longitudinal spread of mechanical excitation through tectorial membrane traveling waves.

Authors:  Jonathan B Sellon; Shirin Farrahi; Roozbeh Ghaffari; Dennis M Freeman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

3.  Prevalence of permanent childhood hearing impairment in the United Kingdom and implications for universal neonatal hearing screening: questionnaire based ascertainment study.

Authors:  H M Fortnum; A Q Summerfield; D H Marshall; A C Davis; J M Bamford
Journal:  BMJ       Date:  2001-09-08

4.  Two novel missense mutations in the TECTA gene in Korean families with autosomal dominant nonsyndromic hearing loss.

Authors:  Borum Sagong; Raekil Park; Yee Hyuk Kim; Kyu-Yup Lee; Jeong-In Baek; Hyun-Joo Cho; In-Jee Cho; Un-Kyung Kim; Sang-Heun Lee
Journal:  Ann Clin Lab Sci       Date:  2010       Impact factor: 1.256

5.  AudioGene: predicting hearing loss genotypes from phenotypes to guide genetic screening.

Authors:  Kyle R Taylor; Adam P Deluca; A Eliot Shearer; Michael S Hildebrand; E Ann Black-Ziegelbein; V Nikhil Anand; Christina M Sloan; Robert W Eppsteiner; Todd E Scheetz; Patrick L M Huygen; Richard J H Smith; Terry A Braun; Thomas L Casavant
Journal:  Hum Mutat       Date:  2013-02-19       Impact factor: 4.878

6.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

7.  Comprehensive genetic testing in the clinical evaluation of 1119 patients with hearing loss.

Authors:  Christina M Sloan-Heggen; Amanda O Bierer; A Eliot Shearer; Diana L Kolbe; Carla J Nishimura; Kathy L Frees; Sean S Ephraim; Seiji B Shibata; Kevin T Booth; Colleen A Campbell; Paul T Ranum; Amy E Weaver; E Ann Black-Ziegelbein; Donghong Wang; Hela Azaiez; Richard J H Smith
Journal:  Hum Genet       Date:  2016-03-11       Impact factor: 4.132

8.  Audioprofile-directed screening identifies novel mutations in KCNQ4 causing hearing loss at the DFNA2 locus.

Authors:  Michael S Hildebrand; Dylan Tack; Sarah J McMordie; Adam DeLuca; In Ae Hur; Carla Nishimura; Patrick Huygen; Thomas L Casavant; Richard J H Smith
Journal:  Genet Med       Date:  2008-11       Impact factor: 8.822

9.  Whole-genome sequencing reveals new insights into age-related hearing loss: cumulative effects, pleiotropy and the role of selection.

Authors:  Dragana Vuckovic; Massimo Mezzavilla; Massimiliano Cocca; Anna Morgan; Marco Brumat; Eulalia Catamo; Maria Pina Concas; Ginevra Biino; Annamaria Franzè; Umberto Ambrosetti; Mario Pirastu; Paolo Gasparini; Giorgia Girotto
Journal:  Eur J Hum Genet       Date:  2018-04-30       Impact factor: 4.246

10.  CADD: predicting the deleteriousness of variants throughout the human genome.

Authors:  Philipp Rentzsch; Daniela Witten; Gregory M Cooper; Jay Shendure; Martin Kircher
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  8 in total

1.  The natural history of OTOF-related auditory neuropathy spectrum disorders: a multicenter study.

Authors:  Ryan K Thorpe; Hela Azaiez; Peina Wu; Qiuju Wang; Lei Xu; Pu Dai; Tao Yang; G Bradley Schaefer; B Robert Peters; Kenny H Chan; Krista S Schatz; Joann Bodurtha; Nathaniel H Robin; Yoel Hirsch; Zuhair Abdalla Rahbeeni; Huijun Yuan; Richard J H Smith
Journal:  Hum Genet       Date:  2021-08-23       Impact factor: 5.881

2.  AudioGene: refining the natural history of KCNQ4, GSDME, WFS1, and COCH-associated hearing loss.

Authors:  Ryan K Thorpe; W Daniel Walls; Rae Corrigan; Amanda Schaefer; Kai Wang; Patrick Huygen; Thomas L Casavant; Richard J H Smith
Journal:  Hum Genet       Date:  2022-01-17       Impact factor: 5.881

3.  COCH-related autosomal dominant nonsyndromic hearing loss: a phenotype-genotype study.

Authors:  Kyung Seok Oh; Daniel Walls; Richard J Smith; Jae Young Choi; Heon Yung Gee; Jinsei Jung; Sun Young Joo; Jung Ah Kim; Jee Eun Yoo; Young Ik Koh; Da Hye Kim; John Hoon Rim; Hye Ji Choi; Hye-Youn Kim; Seyoung Yu
Journal:  Hum Genet       Date:  2021-09-16       Impact factor: 5.881

4.  Diagnostic Yield of Targeted Hearing Loss Gene Panel Sequencing in a Large German Cohort With a Balanced Age Distribution from a Single Diagnostic Center: An Eight-year Study.

Authors:  Anke Tropitzsch; Thore Schade-Mann; Philipp Gamerdinger; Saskia Dofek; Björn Schulte; Martin Schulze; Florian Battke; Sarah Fehr; Saskia Biskup; Andreas Heyd; Marcus Müller; Hubert Löwenheim; Barbara Vona; Martin Holderried
Journal:  Ear Hear       Date:  2022 May/Jun       Impact factor: 3.562

5.  Assessment of Hearing Screening Combined With Limited and Expanded Genetic Screening for Newborns in Nantong, China.

Authors:  Qing-Wen Zhu; Mu-Ting Li; Xun Zhuang; Kai Chen; Wan-Qing Xu; Yin-Hua Jiang; Gang Qin
Journal:  JAMA Netw Open       Date:  2021-09-01

Review 6.  The Pathological Mechanisms of Hearing Loss Caused by KCNQ1 and KCNQ4 Variants.

Authors:  Kazuaki Homma
Journal:  Biomedicines       Date:  2022-09-12

7.  DFNA5 (GSDME) c.991-15_991-13delTTC: Founder Mutation or Mutational Hotspot?

Authors:  Kevin T Booth; Hela Azaiez; Richard J H Smith
Journal:  Int J Mol Sci       Date:  2020-05-31       Impact factor: 5.923

8.  Identification and Computational Analysis of Rare Variants of Known Hearing Loss Genes Present in Five Deaf Members of a Pakistani Kindred.

Authors:  Irum Badshah Saleem; Muhammad Shareef Masoud; Muhammad Qasim; Muhammad Ali; Zubair M Ahmed
Journal:  Genes (Basel)       Date:  2021-11-30       Impact factor: 4.096

  8 in total

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