| Literature DB >> 32380774 |
Andrzej Pawlik1, Damian Malinowski2, Agnieszka Paradowska-Gorycka3, Krzysztof Safranow4, Violetta Dziedziejko4.
Abstract
INTRODUCTION: Rheumatoid arthritis (RA) is an important public health problem because this disease often causes disability. RA is a chronic, destructive autoimmune disease that leads to joint destruction and the development of extraarticular manifestations. VAV1 is an intracellular signal transduction protein that plays a significant role in signal transduction in T cells and affects T cell development, proliferation and activation. The VAV1 gene contains 27 exons and is located on chromosome 19. In this study, we examined the association between VAV1 rs2546133 and rs2617822 polymorphisms and RA.Entities:
Keywords: VAV1; polymorphism; rheumatoid arthritis
Year: 2020 PMID: 32380774 PMCID: PMC7246862 DOI: 10.3390/ijerph17093214
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
The distribution of VAV1 rs2546133 and rs2617822 genotypes in rheumatoid arthritis (RA) patients and the control group.
| Genotype | RA Patients | Control Group |
|
| OR (95% CI) | |||
|---|---|---|---|---|---|---|---|---|
|
| % |
| % | |||||
|
| ||||||||
| CC | 366 | 86.73% | 310 | 91.72% | 0.090 | TT + CT vs. CC | 0.035 | 1.69 (1.05–2.73) |
| CT | 51 | 12.09% | 26 | 7.69% | TT vs. CT + CC | 0.47 | 2.01 (0.39–10.45) | |
| TT | 5 | 1.18% | 2 | 0.59% | TT vs. CC | 0.46 | 2.12 (0.41–10.99) | |
| CT vs. CC | 0.05 | 1.66 (1.01–2.73) | ||||||
| TT vs. CT | 1.00 | 1.28 (0.23–7.02) | ||||||
|
| ||||||||
| C | 783 | 92.77% | 646 | 95.56% | ||||
| T | 61 | 7.23% | 30 | 4.44% | T vs. C | 0.023 | 1.68 (1.07–2.63) | |
|
| ||||||||
| AA | 332 | 78.67% | 271 | 80.18% | 0.86 | GG + AG vs. AA | 0.65 | 1.10 (0.77–1.56) |
| AG | 81 | 19.20% | 61 | 18.04% | GG vs. AG + AA | 0.80 | 1.21 (0.43–3.42) | |
| GG | 9 | 2.13% | 6 | 1.78% | GG vs. AA | 0.80 | 1.22 (0.43–3.48) | |
| AG vs. AA | 0.71 | 1.08 (0.75–1.57) | ||||||
| GG vs. AG | 1.00 | 1.13 (0.38–3.34) | ||||||
|
| ||||||||
| A | 745 | 88.27% | 603 | 89.20% | ||||
| G | 99 | 11.73% | 73 | 10.80% | G vs. A | 0.63 | 1.10 (0.80–1.51) | |
a χ2 test, b Fisher exact test VAV1 rs2546133 HWE: RA group p = 0.06, control group p = 0.131; VAV1 rs2617822 HWE: RA group p = 0.15, control group p = 0.253.
VAV1 rs2546133 and rs2617822 haplotype frequencies.
| Haplotype | RA Patients | Control Group |
| ||
|---|---|---|---|---|---|
| Counts | Frequencies | Counts | Frequencies | ||
| CA | 745 | 0.883 | 602 | 0.893 | 0.52 |
| TG | 61 | 0.072 | 28 | 0.042 | 0.01 |
| CG | 38 | 0.045 | 44 | 0.065 | 0.08 |
a Fisher exact test.
Analysis of the age at onset in relation to VAV1 rs2546133 and rs2617822 genotypes.
| Genotype | Age at Onset (years) | ||
|---|---|---|---|
|
| Mean ± SD |
| |
|
| |||
| CC | 366 | 47.65 ± 13.23 | 0.35 |
| CT | 51 | 46.29 ± 13.26 | |
| TT | 5 | 40.40 ± 11.10 | |
|
| |||
| AA | 332 | 47.46 ± 13.29 | 0.047 |
| AG | 81 | 48.22 ± 12.94 | |
| GG | 9 | 37.56 ± 9.84 | |
a Kruskal–Wallis test.
Analysis of clinical parameters (rheumatoid factor and erosive RA) in relation to VAV1 rs2546133 and rs2617822 genotypes.
| Genotype | Rheumatoid Factor Positive | Erosive RA | Rheumatoid Factor Positive | Erosive RA | |||||
|---|---|---|---|---|---|---|---|---|---|
| (%) |
| (%) |
| OR (95% CI) |
| OR (95% CI) |
| ||
|
| |||||||||
| CC | 74.86% | 0.093 | 79.95% | 0.92 | TT + CT vs. CC | 1.23 (0.62–2.44) | 0.55 | 1.15 (0.56–2.40) | 0.70 |
| CT | 82.35% | 82.35% | TT vs. CT + CC | 0.21 (0.04–1.29) | 0.065 | 0.98 (0.11–8.93) | 0.99 | ||
| TT | 40.00% | 80.00% | TT vs. CC | 0.22 (0.04–1.36) | 0.076 | 1.00 (0.11–9.11) | 1.00 | ||
| CT vs. CC | 1.57 (0.73–3.35) | 0.24 | 1.17 (0.55–2.51) | 0.69 | |||||
| TT vs. CT | 0.14 (0.02–0.98) | 0.028 | 0.86 (0.09–8.61) | 0.90 | |||||
|
| |||||||||
| T allele.b | (+): 7.44% | (+): 7.42% | |||||||
| (−): 7.43% | (−): 6.63% | T vs. C | 1.00 (0.55–1.84) | 0.99 | 1.13 (0.57–2.22) | 0.72 | |||
|
| |||||||||
| AA | 75.16% | 0.77 | 80.61% | 0.68 | GG + AG vs. AA | 1.05 (0.61–1.83) | 0.85 | 0.90 (0.51–1.60) | 0.72 |
| AG | 77.22% | 77.78% | GG vs. AG + AA | 0.65 (0.16–2.63) | 0.54 | 1.99 (0.25–16.17) | 0.51 | ||
| GG | 66.67% | 88.89% | GG vs. AA | 0.66 (0.16–2.70) | 0.56 | 1.92 (0.24–15.67) | 0.53 | ||
| AG vs. AA | 1.12 (0.63–2.01) | 0.70 | 0.84 (0.47–1.52) | 0.57 | |||||
| GG vs. AG | 0.59 (0.13–2.60) | 0.48 | 2.29 (0.27–19.50) | 0.44 | |||||
|
| |||||||||
| G allele.b | (+): 11.81% | (+): 11.72% | |||||||
| (−): 11.88% | (−): 12.05% | G vs. A | 0.99 (0.61–1.62) | 0.98 | 0.97 (0.57–1.64) | 0.91 | |||
a χ2 test. b variant allele frequency in RA patients with feature (rheumatoid factor or erosions) present (+) or absent (−).
Analysis of anti-cyclic citrullinated peptide (anti-CCP) antibodies in relation to VAV1 rs2546133 and rs2617822 genotypes.
| Genotype | Anti-CCP | ||||
|---|---|---|---|---|---|
| (%) |
| OR (95% CI) |
| ||
|
| |||||
| CC | 82.47% | 0.98 | TT + CT vs. CC | 1.03 (0.40–2.67) | 0.96 |
| CT | 83.33% | TT vs. CT + CC | 0.84 (0.09–7.75) | 0.88 | |
| TT | 80.00% | TT vs. CC | 0.85 (0.09–7.84) | 0.89 | |
| CT vs. CC | 1.06 (0.38–2.97) | 0.91 | |||
| TT vs. CT | 0.80 (0.07–8.75) | 0.85 | |||
|
| |||||
| T allele.b | (+): 8.73% | ||||
| (−): 8.75% | T vs. C | 1.00 (0.42–2.34) | 1.00 | ||
|
| |||||
| AA | 83.24% | 0.68 | GG + AG vs. AA | 0.82 (0.38–1.78) | 0.62 |
| AG | 78.72% | GG vs. AG + AA | 1.72 (0.21–14.18) | 0.61 | |
| GG | 88.89% | GG vs. AA | 1.61 (0.19–13.38) | 0.66 | |
| AG vs. AA | 0.75 (0.33–1.67) | 0.47 | |||
| GG vs. AG | 2.16 (0.24–19.38) | 0.48 | |||
|
| |||||
| G allele.b | (+): 14.02% | ||||
| (−): 15.00% | G vs. A | 0.92 (0.47–1.82) | 0.82 | ||
a χ2 test. b variant allele frequency in RA patients with anti-CCP present (+) or absent (−).
Analysis of extraarticular manifestations (vasculitis, amyloidosis and Sjogren syndrome) in relation to VAV1 rs2546133 and rs2617822 genotypes.
| Genotype | Vasculitis | Amyloidosis | Sjogren Syndrome | Vasculitis | Amyloidosis | Sjogren Syndrome | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| (%) |
| (%) |
| (%) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| ||
|
| |||||||||||||
| CC | 6.28% | <0.0001 | 4.37% | 0.0099 | 2.19% | 0.013 | TT + CT vs. CC | 4.51 (2.13–9.55) | <0.0001 | 3.65 (1.48–8.97) | 0.0029 | 0.81 (0.10–6.63) | 0.85 |
| CT | 25.49% | 13.73% | 0.00% | TT vs. CT + CC | 0.00 (−) | 0.49 | 4.28 (0.46–39.88) | 0.16 | 12.78 (1.28–127.52) | 0.0054 | |||
| TT | 0.00% | 20.00% | 20.00% | TT vs. CC | 0.00 (−) | 0.56 | 5.47 (0.58–51.78) | 0.10 | 11.19 (1.12–111.65) | 0.010 | |||
| CT vs. CC | 5.10 (2.39–10.89) | <0.0001 | 3.48 (1.36–8.93) | 0.0061 | 0.00 (−) | 0.29 | |||||||
| TT vs. CT | 0.00 (−) | 0.20 | 1.57 (0.15–16.18) | 0.70 | ∞ (−) | 0.0013 | |||||||
|
| |||||||||||||
| T allele.b | (+): 18.06% | (+): 18.75% | (+): 11.11% | ||||||||||
| (−): 6.22% | (−): 6.53% | (−): 7.14% | T vs. C | 3.32 (1.70–6.48) | 0.00021 | 3.30 (1.52–7.18) | 0.0015 | 1.63 (0.36–7.24) | 0.52 | ||||
|
| |||||||||||||
| AA | 5.72% | <0.0001 | 4.52% | 0.14 | 2.11% | <0.0001 | GG + AG vs. AA | 3.84 (1.90–7.74) | <0.0001 | 2.35 (0.99–5.56) | 0.046 | 1.06 (0.22–5.17) | 0.95 |
| AG | 20.99% | 9.88% | 0.00% | GG vs. AG + AA | 0.00 (−) | 0.35 | 2.12 (0.25–17.68) | 0.48 | 16.57 (2.91–94.42) | <0.0001 | |||
| GG | 0.00% | 11.11% | 22.22% | GG vs. AA | 0.00 (−) | 0.46 | 2.64 (0.31–22.51) | 0.36 | 13.27 (2.33–75.63) | 0.00020 | |||
| AG vs. AA | 4.38 (2.16–8.88) | <0.0001 | 2.32 (0.95–5.67) | 0.059 | 0.00 (−) | 0.19 | |||||||
| GG vs. AG | 0.00 (−) | 0.13 | 1.14 (0.13–10.33) | 0.91 | ∞ (−) | <0.0001 | |||||||
|
| |||||||||||||
| G allele.b | (+): 23.61% | (+): 20.83% | (+): 22.22% | ||||||||||
| (−): 10.62% | (−): 11.18% | (−): 11.50% | G vs. A | 2.60 (1.44–4.69) | 0.0011 | 2.09 (1.01–4.34) | 0.044 | 2.20 (0.71–6.82) | 0.16 | ||||
a χ2 test. b variant allele frequency in RA patients with feature (vasculitis, amyloidosis or Sjogren syndrome) present (+) or absent (−).