Literature DB >> 32379452

ADME Prediction with KNIME: Development and Validation of a Publicly Available Workflow for the Prediction of Human Oral Bioavailability.

Gabriela Falcón-Cano1, Christophe Molina2, Miguel Ángel Cabrera-Pérez1,3.   

Abstract

In silico prediction of human oral bioavailability is a relevant tool for the selection of potential drug candidates and for the rejection of those molecules with less probability of success during the early stages of drug discovery and development. However, the high variability and complexity of oral bioavailability and the limited experimental data in the public domain have mainly restricted the development of reliable in silico models to predict this property from the chemical structure. In this study we present a KNIME automated workflow to predict human oral bioavailability of new drug and drug-like molecules based on five machine learning approaches combined into an ensemble model. The workflow is freely accessible and allows the quick and easy prediction of oral bioavailability for new molecules. Users do not require any knowledge or advanced experience in machine learning or statistical modeling to automatically obtain their predictions, increasing the potential use of the present proposal.

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Year:  2020        PMID: 32379452     DOI: 10.1021/acs.jcim.0c00019

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  8 in total

Review 1.  Current Strategies in Assessment of Nanotoxicity: Alternatives to In Vivo Animal Testing.

Authors:  Hung-Jin Huang; Yu-Hsuan Lee; Yung-Ho Hsu; Chia-Te Liao; Yuh-Feng Lin; Hui-Wen Chiu
Journal:  Int J Mol Sci       Date:  2021-04-19       Impact factor: 5.923

2.  HobPre: accurate prediction of human oral bioavailability for small molecules.

Authors:  Min Wei; Xudong Zhang; Xiaolin Pan; Bo Wang; Changge Ji; Yifei Qi; John Z H Zhang
Journal:  J Cheminform       Date:  2022-01-06       Impact factor: 5.514

3.  Processing binding data using an open-source workflow.

Authors:  Errol L G Samuel; Secondra L Holmes; Damian W Young
Journal:  J Cheminform       Date:  2021-12-11       Impact factor: 5.514

4.  ADME prediction with KNIME: In silico aqueous solubility consensus model based on supervised recursive random forest approaches.

Authors:  Gabriela Falcón-Cano; Christophe Molina; Miguel Ángel Cabrera-Pérez
Journal:  ADMET DMPK       Date:  2020-08-07

5.  Random Forest Model Prediction of Compound Oral Exposure in the Mouse.

Authors:  Haseeb Mughal; Han Wang; Matthew Zimmerman; Marc D Paradis; Joel S Freundlich
Journal:  ACS Pharmacol Transl Sci       Date:  2021-01-26

Review 6.  Cheminformatic Characterization of Natural Antimicrobial Products for the Development of New Lead Compounds.

Authors:  Samson Olaitan Oselusi; Alan Christoffels; Samuel Ayodele Egieyeh
Journal:  Molecules       Date:  2021-06-29       Impact factor: 4.411

7.  ChemBioSim: Enhancing Conformal Prediction of In Vivo Toxicity by Use of Predicted Bioactivities.

Authors:  Marina Garcia de Lomana; Andrea Morger; Ulf Norinder; Roland Buesen; Robert Landsiedel; Andrea Volkamer; Johannes Kirchmair; Miriam Mathea
Journal:  J Chem Inf Model       Date:  2021-06-21       Impact factor: 4.956

8.  Integration of In Silico, In Vitro and In Situ Tools for the Preformulation and Characterization of a Novel Cardio-Neuroprotective Compound during the Early Stages of Drug Development.

Authors:  Claudia Miranda; Alejandro Ruiz-Picazo; Paula Pomares; Isabel Gonzalez-Alvarez; Marival Bermejo; Marta Gonzalez-Alvarez; Alex Avdeef; Miguel-Ángel Cabrera-Pérez
Journal:  Pharmaceutics       Date:  2022-01-13       Impact factor: 6.321

  8 in total

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