Literature DB >> 32378722

Editorial: Making the Best Use of Test Kits for COVID-19.

Clarice R Weinberg1.   

Abstract

Entities:  

Mesh:

Year:  2020        PMID: 32378722      PMCID: PMC7239266          DOI: 10.1093/aje/kwaa080

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


× No keyword cloud information.
Expanded molecular testing for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is urgently needed to enable identification of infected individuals, tracing and quarantining of their contacts, and clearing of healthy people to return to work. Unfortunately, test kits continue to be in short supply. An ingenious strategy for screening was developed by a statistician during World War II, when the military needed an efficient way to test recruits for syphilis (1). If an assay is sensitive enough to perform well even when a positive sample is diluted by a factor of k, then specimens from k people can be combined and tested together. Those individuals would then be separately tested only if their pool tested positive. If the pool was negative, the individuals who were included in it would be presumed to be negative. Specimen pooling has been further developed for other applications in epidemiology, such as for retrospective case-control studies (2, 3) and for in silico protection of personal data in meta-analyses (4). However, the original value of Dorfman’s idea as a powerful method for efficient screening is often overlooked. If a condition is rare, this 2-stage approach can markedly improve the efficiency of screening. For example, if 1% of asymptomatic people are infected, pooled testing based on pools of 10 persons at a time would allow 1,000 people to be screened with only approximately 200 kits, which is a 5-fold improvement in efficiency. If part of each original specimen was set aside, those specimens could quickly be used to individually test persons from a positive pool. Because the molecular test for SARS-CoV-2 is based on reverse-transcriptase-polymerase chain reaction, it should work well despite the need to split the original specimens. In fact, the ability of pooled analysis to reliably detect SARS-CoV-2 in a pool comprising 1 positive specimen and up to 31 negative specimens has recently been confirmed empirically (5, 6). Because the optimal pool size (which can readily be calculated) increases with the rarity of the condition, people should be grouped according to their estimated a priori risk of being infected. Thus, asymptomatic hospital workers and people with whom they live might need to be studied in smaller pools, perhaps of 4 persons, whereas other essential workers with public exposure (e.g., grocery store employees, bus drivers, and restaurant workers) might best be assigned to pools of 6. For people who have been under various levels of community risk and lock-down restrictions, the optimal pool size would be tailored accordingly (e.g., smaller pools for people who live in metropolitan New York, larger for those in many rural counties). The pool size could be revised and adapted to reflect actual positivity rates found in a particular category of people as the program is implemented. For example, the pool size may need to be made smaller for those who have been using public transportation. Symptomatic people should still be individually tested, as should anyone who has spent substantial time with an infected person. Pooling could enable current lock-down restrictions to be loosened to home plus work for those who are cleared. After clearance, monitoring could be ongoing, with declining resample frequency and increasing pool size until the estimated risk has come down sufficiently; certain categories (e.g., people who live with hospital workers) would undergo more frequent retesting. Despite the fact that pooled testing is an old idea, it has apparently rarely been implemented for coronavirus disease 19 (COVID-19) (7, 8). It’s time to put Dorfman’s approach to work in the broader screening context so we can all get back to work withoutfear.
  6 in total

1.  Using pooled exposure assessment to improve efficiency in case-control studies.

Authors:  C R Weinberg; D M Umbach
Journal:  Biometrics       Date:  1999-09       Impact factor: 2.571

2.  Sample Pooling as a Strategy to Detect Community Transmission of SARS-CoV-2.

Authors:  Catherine A Hogan; Malaya K Sahoo; Benjamin A Pinsky
Journal:  JAMA       Date:  2020-05-19       Impact factor: 56.272

3.  Evaluation of COVID-19 RT-qPCR Test in Multi sample Pools.

Authors:  Idan Yelin; Noga Aharony; Einat Shaer Tamar; Amir Argoetti; Esther Messer; Dina Berenbaum; Einat Shafran; Areen Kuzli; Nagham Gandali; Omer Shkedi; Tamar Hashimshony; Yael Mandel-Gutfreund; Michael Halberthal; Yuval Geffen; Moran Szwarcwort-Cohen; Roy Kishony
Journal:  Clin Infect Dis       Date:  2020-11-19       Impact factor: 9.079

4.  Binary regression analysis with pooled exposure measurements: a regression calibration approach.

Authors:  Zhiwei Zhang; Paul S Albert
Journal:  Biometrics       Date:  2010-07-21       Impact factor: 2.571

5.  Assessment of Specimen Pooling to Conserve SARS CoV-2 Testing Resources.

Authors:  Baha Abdalhamid; Christopher R Bilder; Emily L McCutchen; Steven H Hinrichs; Scott A Koepsell; Peter C Iwen
Journal:  Am J Clin Pathol       Date:  2020-05-05       Impact factor: 2.493

6.  Addressing data privacy in matched studies via virtual pooling.

Authors:  P Saha-Chaudhuri; C R Weinberg
Journal:  BMC Med Res Methodol       Date:  2017-09-07       Impact factor: 4.615

  6 in total
  5 in total

1.  Optimal uses of pooled testing for COVID-19 incorporating imperfect test performance and pool dilution effect: An application to congregate settings in Los Angeles County.

Authors:  Roch A Nianogo; I Obi Emeruwa; Prabhu Gounder; Vladimir Manuel; Nathaniel W Anderson; Tony Kuo; Moira Inkelas; Onyebuchi A Arah
Journal:  J Med Virol       Date:  2021-05-27       Impact factor: 20.693

Review 2.  Trends in MERS-CoV, SARS-CoV, and SARS-CoV-2 (COVID-19) Diagnosis Strategies: A Patent Review.

Authors:  José Adão Carvalho Nascimento Junior; Anamaria Mendonça Santos; Ana Maria Santos Oliveira; Adriana Gibara Guimarães; Lucindo José Quintans-Júnior; Henrique Douglas Melo Coutinho; Natália Martins; Lysandro Pinto Borges; Mairim Russo Serafini
Journal:  Front Public Health       Date:  2020-10-27

3.  On an optimal testing strategy for workplace settings operating during the COVID-19 pandemic.

Authors:  X Hernandez; S Valentinotti
Journal:  PLoS One       Date:  2022-03-02       Impact factor: 3.240

4.  Accelerating COVID-19 testing: An experimental approach.

Authors:  Chandramouli Ganesan; Manikandan Vandavasi; Amol S Dhaigude
Journal:  J Public Aff       Date:  2022-07-10

5.  Critical Aspects Concerning the Development of a Pooling Approach for SARS-CoV-2 Diagnosis Using Large-Scale PCR Testing.

Authors:  Daniel Cruceriu; Oana Baldasici; Loredana Balacescu; Stefana Gligor-Popa; Mirela Flonta; Milena A Man; Simona Visan; Catalin Vlad; Adrian P Trifa; Ovidiu Balacescu; Patriciu Achimas-Cadariu
Journal:  Viruses       Date:  2021-05-13       Impact factor: 5.048

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.