Literature DB >> 32375926

Rugamonas aquatica sp. nov. and Rugamonas rivuli sp. nov., isolated from a subtropical stream in PR China.

Huibin Lu1,2,3, Tongchu Deng1,3,2, Feifei Liu2,1,3, Yonghong Wang1,3,2, Meiying Xu3,1,2.   

Abstract

Two Gram-stain-negative, catalase- and oxidase-positive, rod-shaped, motile strains (FT29WT and FT103WT) were isolated from a subtropical stream in PR China. Comparisons based on 16S rRNA gene sequences showed that strains FT29WT and FT103WT showed 98.7 and 98.6 % 16S rRNA gene sequence similarities to Rugamonas rubra CCM 3730T as their closest neighbour, respectively. The calculated pairwise OrthoANIu values between strain R. rubra CCM 3730T and strains FT29WT and FT103WT were all 81.4 %. The respiratory quinone of strains FT29WT and FT103WT was determined to be Q-8. The major fatty acids were C16 : 1 ω7c, C16 : 0 and C12 : 0. The polar lipids of strain FT103WT included phosphatidylethanolamine, phosphatidylglycerol and one unidentified phospholipid, but strain FT29WT did not contain phosphatidylglycerol. The genome sizes of strains FT29WT and FT103WT were 7.23 and 6.84 Mbp with G+C contents of 63.8 and 63.9 %, respectively. Although the pairwise OrthoANIu value between strains FT29WT and FT103WT was 95.2 % which located in the transition region of species demarcation, the dissimilarities in the aspects of phenotypic, biochemical and genotypic characteristics supported these two strains should belong to the different species within genus Rugamonas, for which the names Rugamonas aquatica sp. nov. (type strain FT29WT=GDMCC 1.1643T=KACC 21316T) and Rugamonas rivuli sp. nov. (type strain FT103WT=GDMCC 1.1685T=KACC 21477T) are proposed.

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Keywords:  OrthoANIu; Rugamonas; bacterial identification; subtropical stream

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Year:  2020        PMID: 32375926     DOI: 10.1099/ijsem.0.004172

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Duganella aceris sp. nov., isolated from tree sap and proposal to transfer of Rugamonas aquatica and Rugamonas rivuli to the genus Duganella as Duganella aquatica comb. nov., with the emended description of the genus Rugamonas.

Authors:  In Seop Kim; Soon Dong Lee; Dabin Jeon; Hanna Choe; Ji-Sun Kim
Journal:  Arch Microbiol       Date:  2021-03-22       Impact factor: 2.552

2.  Classification of a Violacein-Producing Psychrophilic Group of Isolates Associated with Freshwater in Antarctica and Description of Rugamonas violacea sp. nov.

Authors:  Ivo Sedláček; Pavla Holochová; Roman Sobotka; Hans-Jürgen Busse; Pavel Švec; Stanislava Králová; Ondrej Šedo; Jan Pilný; Eva Staňková; Vendula Koublová; Karel Sedlář
Journal:  Microbiol Spectr       Date:  2021-08-11
  2 in total

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