Literature DB >> 32374162

Reaction Library to Predict Direct Photochemical Transformation Products of Environmental Organic Contaminants in Sunlit Aquatic Systems.

Chenyi Yuan1, Caroline Tebes-Stevens2, Eric J Weber2.   

Abstract

Cheminformatics-based applications to predict transformation pathways of environmental contaminants are useful to quickly prioritize contaminants with potentially toxic/persistent products. Direct photolysis can be an important degradation pathway for sunlight-absorbing compounds in aquatic systems. In this study, we developed the first freely available direct phototransformation pathway predictive tool, which uses a rule-based reaction library. Journal publications studying diverse contaminants (such as pesticides, pharmaceuticals, and energetic compounds) were systematically compiled to encode 155 reaction schemes into the reaction library. The execution result of this predictive tool was internally evaluated against 390 compounds from the compiled journal publications and externally evaluated against 138 compounds from the regulatory reports. The recall (sensitivity) and precision (selectivity) were 0.62 and 0.35, respectively, for internal evaluation, and 0.56 and 0.20, respectively, for external evaluation, when only the products formed from the first reaction step were counted. This predictive tool could help to narrow the data gaps in chemical registration/evaluation and inform future experimental studies.

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Year:  2020        PMID: 32374162      PMCID: PMC7539852          DOI: 10.1021/acs.est.0c00484

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   9.028


  16 in total

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Authors:  A Sedykh; R Saiakhov; G Klopman
Journal:  Chemosphere       Date:  2001-11       Impact factor: 7.086

2.  Making "real" molecules in virtual space.

Authors:  György Pirok; Nóra Maté; Jeno Varga; József Szegezdi; Miklós Vargyas; Szilard Dórant; Ferenc Csizmadia
Journal:  J Chem Inf Model       Date:  2006 Mar-Apr       Impact factor: 4.956

3.  An expert system to predict the forced degradation of organic molecules.

Authors:  Alexis D C Parenty; William G Button; Martin A Ott
Journal:  Mol Pharm       Date:  2013-07-18       Impact factor: 4.939

4.  Prediction of Hydrolysis Products of Organic Chemicals under Environmental pH Conditions.

Authors:  Caroline Tebes-Stevens; Jay M Patel; W Jack Jones; Eric J Weber
Journal:  Environ Sci Technol       Date:  2017-04-21       Impact factor: 9.028

5.  The role of carbonate radical in limiting the persistence of sulfur-containing chemicals in sunlit natural waters.

Authors:  J Huang; S A Mabury
Journal:  Chemosphere       Date:  2000-12       Impact factor: 7.086

6.  A novel estrogenic compound transformed from fenthion under UV-A irradiation.

Authors:  Kenta Yamada; Masanori Terasaki; Masakazu Makino
Journal:  J Hazard Mater       Date:  2010-04-15       Impact factor: 10.588

7.  New insights into the photoreactivity of the organophosphorus pesticide fenthion: a sigma aryl cation as a key intermediate in the photodecomposition.

Authors:  Stefano Torrisi; Salvatore Sortino
Journal:  J Agric Food Chem       Date:  2004-09-22       Impact factor: 5.279

8.  Photodegradation of RDX in aqueous solution: a mechanistic probe for biodegradation with Rhodococcus sp.

Authors:  J Hawari; A Halasz; C Groom; S Deschamps; L Paquet; C Beaulieu; A Corriveau
Journal:  Environ Sci Technol       Date:  2002-12-01       Impact factor: 9.028

9.  CERAPP: Collaborative Estrogen Receptor Activity Prediction Project.

Authors:  Kamel Mansouri; Ahmed Abdelaziz; Aleksandra Rybacka; Alessandra Roncaglioni; Alexander Tropsha; Alexandre Varnek; Alexey Zakharov; Andrew Worth; Ann M Richard; Christopher M Grulke; Daniela Trisciuzzi; Denis Fourches; Dragos Horvath; Emilio Benfenati; Eugene Muratov; Eva Bay Wedebye; Francesca Grisoni; Giuseppe F Mangiatordi; Giuseppina M Incisivo; Huixiao Hong; Hui W Ng; Igor V Tetko; Ilya Balabin; Jayaram Kancherla; Jie Shen; Julien Burton; Marc Nicklaus; Matteo Cassotti; Nikolai G Nikolov; Orazio Nicolotti; Patrik L Andersson; Qingda Zang; Regina Politi; Richard D Beger; Roberto Todeschini; Ruili Huang; Sherif Farag; Sine A Rosenberg; Svetoslav Slavov; Xin Hu; Richard S Judson
Journal:  Environ Health Perspect       Date:  2016-02-23       Impact factor: 9.031

10.  BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification.

Authors:  Yannick Djoumbou-Feunang; Jarlei Fiamoncini; Alberto Gil-de-la-Fuente; Russell Greiner; Claudine Manach; David S Wishart
Journal:  J Cheminform       Date:  2019-01-05       Impact factor: 5.514

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  2 in total

1.  Prioritizing Direct Photolysis Products Predicted by the Chemical Transformation Simulator: Relative Reasoning and Absolute Ranking.

Authors:  Chenyi Yuan; Caroline Tebes-Stevens; Eric J Weber
Journal:  Environ Sci Technol       Date:  2021-04-21       Impact factor: 9.028

2.  Computational Approaches for the Prediction of Environmental Transformation Products: Chlorination of Steroidal Enones.

Authors:  Christopher J Knutson; Nicholas C Pflug; Wyanna Yeung; Matthew Grobstein; Eric V Patterson; David M Cwiertny; James B Gloer
Journal:  Environ Sci Technol       Date:  2021-10-12       Impact factor: 11.357

  2 in total

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