Literature DB >> 32371024

Whole genome sequence of Diaporthe capsici, a new pathogen of walnut blight.

Xinmei Fang1, Kai Qin1, Shujiang Li1, Shan Han1, Tianhui Zhu2, Xinmei Fang1, Kai Qin1.   

Abstract

Many fungi in the Diaporthe genus across the world are pathogenic. Diaporthe capsici. is a pathogenic fungus that can infect peppers and walnuts, causing their death. The aim of this study was to develop a genomic resource to provide substantial data and a theoretical basis for research on molecular pathogenesis, transcriptome, proteome, and metabonome of D. capsici. The whole genome of D. capsici was sequenced using the PacBio RSII sequencing platform, and functional annotation was performed using different public databases. The genome was found to be 57.56 Mb in size, with an N50 contig size of 5,171,887 bp, and encodes 14,425 putative genes. This is the first genome-scale assembly and annotation for D. capsici, which is the eighth species in Diaporthe to be sequenced.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Diaporthe capsici; Functional annotation; Pathogenic fungus; Whole genome sequencing

Year:  2020        PMID: 32371024     DOI: 10.1016/j.ygeno.2020.04.018

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  3 in total

1.  Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus.

Authors:  Eilyn Mena; Silvia Garaycochea; Silvina Stewart; Marcos Montesano; Inés Ponce De León
Journal:  BMC Genomics       Date:  2022-03-03       Impact factor: 3.969

2.  Genome Analyses of Two Blueberry Pathogens: Diaportheamygdali CAA958 and Diaporthe eres CBS 160.32.

Authors:  Sandra Hilário; Micael F M Gonçalves; Cátia Fidalgo; Marta Tacão; Artur Alves
Journal:  J Fungi (Basel)       Date:  2022-07-29

3.  The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae.

Authors:  Abdul Qayoom Majeedano; Jie Chen; Tianhui Zhu; Shujiang Li; Zeeshan Ghulam Nabi Gishkori; Sumbul Mureed Mastoi; Gang Wang
Journal:  J Fungi (Basel)       Date:  2022-03-02
  3 in total

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