| Literature DB >> 32363175 |
Ganglong Yang1, Naseruddin Höti1, Shao-Yung Chen1,2, Yangying Zhou1, Qiong Wang2, Michael Betenbaugh2, Hui Zhang1,2.
Abstract
Recently, the glycoproteomic analysis of intact glycopeptides has emerged as an effective approach to decipher the glycan modifications of glycoproteins at the site-specific level. A rapid method to enrich intact glycopeptides is essential for the analysis of glycoproteins, especially for biopharmaceutical proteins. In this study, we established a one-step method for the rapid capture of intact glycopeptides for analysis by mass spectrometry. Compared to the conventional sequential enrichment method, the one-step intact glycopeptide enrichment method reduced the sample preparation time and improved the detection of intact glycopeptides with long sequences or non-polar amino acids. Moreover, an increased number of glycosite-containing peptides was identified by the one-step method compared with the sequential method. When we applied this method to the glycoproteomic analysis of glycoengineered Chinese hamster ovary (CHO)-K1 cells with α1,6-fucosyltransferase (FUT8) knockout, the results showed that the knockout of FUT8 altered the overall glycosylation profile of CHO-K1 cells with the elimination of core fucosylation and together with increases in high-mannose and sialylated N-glycans. Interestingly, the knockout of the FUT8 also appeared to regulate the expression of glycoproteins involved in several functions and pathways in CHO-K1 cells, such as the down-regulation of an intracellular lectin LMAN2 showing cellular adaptation to the alterations in FUT8 knockout cells. These findings indicate that the site-specific characterization of glycoproteins from glycoengineered CHO-K1 cells can be achieved rapidly using the one-step intact glycopeptide enrichment method, which could provide insights for bio-analysts and biotechnologists to better tailor therapeutic drugs.Entities:
Keywords: FUT8 knockout; glycoengineered CHO cells; intact glycopeptides; mass spectrometry; one-step enrichment
Year: 2020 PMID: 32363175 PMCID: PMC7180227 DOI: 10.3389/fchem.2020.00240
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Figure 1The workflow of one-step enrichment and analysis of intact glycopeptides.
Figure 2Enrichment of intact glycopeptides from FUT8 KO CHO cells by one-step and sequential methods. (A) Identification and distribution of intact glycopeptides, glycosites, and glycoproteins identified from FUT8 KO CHO cells by different methods. (B) Venn diagram of identified glycosites and their glycans by global, one-step, and sequential methods. (C) The length and grand average of hydropathy of identified glycopeptides enriched by one-step and sequential methods.
Figure 3One-step enrichment of glycopeptides from WT and FUT8 KO CHO-K1 cells. (A) Distribution of IGPs, glycosites, glycans, and glycoproteins identified from WT and FUT8 KO CHO-K1 cells. (B) Glycosite frequency on the identified glycoproteins. (C) N-glycosylation of laminin subunit alpha-5 with 10 glycosites, including the structure type and relative abundance (peptide spectrum match) of glycans on each glycosite. (D) Heat map of glycosites, intact glycopeptides (IGPs), core-fucosyalted IGPs, and glycans of WT and FUT8 KO CHO-K1 cells.
Figure 4Relative abundance of glycoproteins between WT and FUT8 KO CHO-K1 cells. Glycosylation relative abundance of identified proteins between WT and FUT8 KO CHO-K1 cells, showing the correlation between the protein expression and their glycosylation abundance in WT and FUT8 KO CHO-K1 cells.