| Literature DB >> 32355774 |
Lisha Teng1,2,3, Yanling Zhang1,2,3,4, Luxi Ye1,2,3, Junhao Lv1,2,3, Youying Mao5, Ronen Schneider6, Jianghua Chen1,2,3, Hong Jiang1,2,3, Jianyong Wu1,2,3.
Abstract
BACKGROUND: Hereditary renal hypouricemia (HRH) is a genetically heterogenetic disease. Patients with HRH are almost asymptomatic; but some may experience exercise-induced acute kidney injury (EAKI) and nephrolithiasis which may bring concerns regarding the risk-benefit ratio as marginal kidney donors. This study examined the pathogenic mutations of hypouricemia in two recipients after receiving kidney transplantation, providing preliminary evidence for the mechanism of hypouricemia.Entities:
Keywords: Hereditary renal hypouricemia (HRH); SLC22A12; kidney transplantation; single nucleotide polymorphism (SNP)
Year: 2020 PMID: 32355774 PMCID: PMC7186701 DOI: 10.21037/atm.2020.02.140
Source DB: PubMed Journal: Ann Transl Med ISSN: 2305-5839
Figure 1Clinical data of the patients. (A) We collected the implants transplanted into the two recipients immediately (S1 and S2) and followed for three and a half years post-transplantation (S3) and a healthy control (HC). Variation of serum creatinine (B) and uric acid (C) within years of follow-up in the two recipients.
Laboratory data on admission
| Biochemical date | Recipient 1 | Recipient 2 |
|---|---|---|
| Gender | Male | Female |
| Age (years) | 41 | 37 |
| Complete blood cell count | ||
| WBC (×109/L) | 7.6 | 6.3 |
| Hemoglobin (g/dL) | 118 | 83 |
| Hematocrit (%) | 35.7 | 26.7 |
| Platelets (×109/L) | 145 | 128 |
| Serum chemistries | ||
| Total protein (g/L) | 87.6 | – |
| Albumin (g/L) | 50.7 | 45 |
| BUN (mg/dL) | 17.1 | 17.6 |
| Cr (μmol/L) | 1004 | 823 |
| Uric acid (μmol/L) | 378 | 431 |
| Sodium (mmol/L) | 137 | 132 |
| Potassium (mmol/L) | 4.97 | 3.7 |
| Chloride (mmol/L) | 97 | 89 |
| Calcium (mmol/L) | 2.75 | 2.5 |
| Phosphorus (mmol/L) | 2.29 | 1.6 |
| Urinalysis | ||
| pH | 5.5 | 8.5 |
| Specific gravity | 1.014 | 1.008 |
| Protein | ++ | ++ |
| Occult blood | +++ | +++ |
| WBC sediment (/HPF) | 1–3 | 0–2 |
Figure 2Mutations found in implants (S1, S2, S3) with hereditary hypouricemia. (A) The homozygous mutation of SLC2A9-p.R294H (c.G881A) discovered in the implants (S1, S2, S3) and the healthy control had happened to find the heterozygous mutation as well; (B) the other mutations discovered in this study; (C) SLC22A12 p.R89H mutation is predicted to be possibly damaging with a score of 0.809 (sensitivity: 0.84; specificity: 0.93); p.L181V mutation is predicted to be probably damaging with a score of 0.996 (sensitivity: 0.55; specificity: 0.98).
Sequence variations of coding regions in candidate genes between the implants transplanted into the two recipients immediately (S1 and S2) and followed for three and a half years post-transplantation (S3) and a healthy control (HC)
| Chr | Exon | SNP | Nucleotide change | Amino acid change | HC | S1 | S2 | S3 | Gene | Previously reported |
|---|---|---|---|---|---|---|---|---|---|---|
| 4 | 7 | C>T | c.G881A | p.R294H | Heter | Homo | Homo | Homo | SLC2A9 | Yes |
| 4 | 5 | G>T | c.C421A | p.Q141K | None | Heter | Heter | Heter | ABCG2 | No |
| 4 | 4 | G>A | c.C376T | p.Q126X | None | Heter | Heter | Heter | ABCG2 | No |
| 6 | 3 | C>T | c.G298A | p.A100T | None | Heter | Heter | Heter | SLC17A3 | Yes |
| 11 | 1 | G>A | c.G266A | p.R89H | None | Heter | Heter | Heter | SLC22A12 | No |
| 11 | 1 | C>G | c.C541G | p.L181V | None | Heter | Heter | Heter | SLC22A12 | No |
| 13 | 8 | C>A | c.G912T | p.K304N | None | Heter | Heter | Heter | ABCC4 | No |
SNP, single nucleotide polymorphism.
The value of differentially expressed genes in hypouricemia
| Gene symbol | Value control | Value renal hypouricemia | log2 (fold change) | P value | Biological process |
|---|---|---|---|---|---|
|
| 80.8162 | 0.391208 | −7.69057 | 0.043357 | ATP metabolic process |
|
| 3.75744 | 767.974 | 7.67517 | 0.015972 | Immunoglobulin biosynthetic process |
|
| 1.03823 | 38.5892 | 5.21599 | 0.043357 | Complement receptor mediated signaling pathway |
|
| 43.3991 | 3757.78 | 6.43607 | 0.027141 | Epithelial to mesenchymal transition |
|
| 137.403 | 1.12964 | −6.92641 | 0.007747 | DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest |
|
| 2.09134 | 44.666 | 4.41668 | 0.018538 | T cell mediated immunity |
|
| 1.17293 | 89.9344 | 6.26068 | 0.007747 | RNA processing |
|
| 1.03685 | 50.396 | 5.60303 | 0.035989 | Negative regulation of cell proliferation |
|
| 6.79902 | 0.032998 | −7.68679 | 0.018538 | Regulation of systemic arterial blood pressure by baroreceptor feedback |
|
| 243.97 | 5.42007 | −5.49225 | 0.048447 | Metabolic process |
|
| 3.86033 | 0.047077 | −6.35757 | 0.044526 | Protein autophosphorylation |
|
| 53.6641 | 0.363949 | −7.20408 | 0.027141 | Kidney development |
|
| 1.40047 | 136.596 | 6.60786 | 0.028838 | Multicellular organismal development |
|
| 1.14152 | 181.946 | 7.31641 | 0.035989 | Pattern recognition receptor signaling pathway |
|
| 2.00949 | 141.798 | 6.14087 | 0.007747 | Small gtpase mediated signal transduction |
|
| 18.6176 | 679.856 | 5.19049 | 0.007747 | – |
|
| 63.7139 | 3.18928 | −4.32031 | 0.043357 | Negative regulation of cytokine production |
|
| 75.0647 | 1.82555 | −5.36173 | 0.007747 | Protein complex assembly |
|
| 3.88494 | 53.4241 | 3.78153 | 0.007747 | Positive regulation of type I interferon-mediated signaling pathway |
|
| 4.68808 | 223.525 | 5.5753 | 0.012214 | Cortical actin cytoskeleton organization |
|
| 2.19739 | 97.797 | 5.47592 | 0.035989 | Regulation of cell growth |
|
| 1.64857 | 58.1647 | 5.14086 | 0.021719 | Positive regulation of exocytosis |
|
| 8.19721 | 87.8446 | 3.42175 | 0.032078 | – |
|
| 0.851521 | 0.090405 | −3.23557 | 0.027141 | Immune response |
|
| 0.344843 | 25.4095 | 6.20328 | 0.007747 | – |
|
| 22.4149 | 0.978012 | −4.51846 | 0.041821 | – |
|
| 62.2206 | 2800.48 | 5.49214 | 0.034038 | Inflammatory response |
|
| 2.73845 | 526.051 | 7.5857 | 0.007747 | Adaptive immune response |
|
| 427.903 | 0.162788 | −11.3601 | 0.007747 | Negative regulation of steroid metabolic process |
|
| 140.173 | 5.13269 | -4.77135 | 0.030624 | Potassium ion transport |
|
| 1.46492 | 40.9133 | 4.80368 | 0.034038 | – |
|
| 205.465 | 13.256 | −3.95418 | 0.041821 | Regulation of immune system process |
|
| 5.01392 | 151.328 | 4.9156 | 0.040912 | Adenosine catabolic process |
|
| 5.27652 | 0.01453 | −8.50441 | 0.04645 | Positive regulation of cell-substrate adhesion |
|
| 3.1429 | 36.694 | 3.54538 | 0.032078 | Positive regulation of MDA-5 signaling pathway |
|
| 12.1655 | 0.050895 | −7.90105 | 0.043357 | Cell growth involved in cardiac muscle cell development |
|
| 0.829966 | 59.2623 | 6.15792 | 0.044526 | Regulation of DNA recombination |
|
| 1.18801 | 573.609 | 8.91537 | 0.007747 | Skeletal system development |
|
| 32.3432 | 2.55042 | −3.66466 | 0.037849 | Homophilic cell adhesion via plasma membrane adhesion molecules |
|
| 5.50722 | 464.119 | 6.39703 | 0.007747 | Negative regulation of lymphocyte proliferation |
|
| 2.79516 | 65.8158 | 4.55743 | 0.012214 | Regulation of small gtpase mediated signal transduction |
|
| 0.035818 | 1.13568 | 4.9867 | 0.007747 | G1/S transition of mitotic cell cycle |
|
| 21.8556 | 1.26056 | −4.11586 | 0.028838 | Maintenance of cell polarity |
|
| 6.04009 | 0.042097 | −7.1647 | 0.007747 | Positive regulation of mitochondrial fusion |
|
| 0.646565 | 58.6186 | 6.50242 | 0.040912 | Lymphocyte differentiation |
|
| 8.70526 | 0.170523 | −5.67385 | 0.007747 | – |
|
| 8.68294 | 0.047729 | −7.50719 | 0.027141 | Negative regulation of hydrogen peroxide-mediated programmed cell death |
|
| 19.5629 | 635.724 | 5.02221 | 0.007747 | – |
|
| 1.52424 | 0.054565 | −4.80398 | 0.043357 | Positive regulation of transcription from RNA polymerase II promoter |
|
| 1.31113 | 157.821 | 6.91133 | 0.041821 | Fc-gamma receptor signaling pathway involved in phagocytosis |
|
| 2.81901 | 205.933 | 6.19084 | 0.044526 | Positive regulation of epithelial to mesenchymal transition |
|
| 12.1687 | 0.009194 | −10.3702 | 0.037849 | Sensory perception of temperature stimulus |
Figure 3Screening for differentially expressed genes in hypouricemia. (A) The clustering of differential genes in heatmap. The color in the heatmap represents the log 2-fold change of expression values. Text on the right of heatmap indicates the enriched gene ontology terms for each cluster of genes; (B) top 30 pathways from Kyoto Encyclopedia of Genes and Genomes enrichment analysis. The x-axis represents KEGG enrichment scores and the y-axis represents pathway terms. The colors of circle indicate P values and the size of circle indicates the numbers of differential RNAs. The circle with redder and larger indicating that the enrichment of the pathway is higher and differential RNAs number is larger in the pathway.
Other SNP sites found in transplants and possible pathways
| Gene | SNP ID | Chr | Risk allele | Possible pathway |
|---|---|---|---|---|
| EGFR | rs62452902 | 7 | A | Pathways in cancer |
| MAPK signaling pathway | ||||
| Regulation of actin cytoskeleton | ||||
| Cytokine-cytokine receptor interaction | ||||
| IL7R | rs10058453 | 5 | T | Hematopoietic cell lineage |
| Jak-STAT signaling pathway | ||||
| Cytokine-cytokine receptor interaction | ||||
| GHR | rs4146624 | 5 | A | Jak-STAT signaling pathway |
| Cytokine-cytokine receptor interaction |
SNP, single nucleotide polymorphism; GHR, growth hormone receptor.