Literature DB >> 32355774

Donor-derived hypouricemia in irrelevant recipients caused by kidney transplantation.

Lisha Teng1,2,3, Yanling Zhang1,2,3,4, Luxi Ye1,2,3, Junhao Lv1,2,3, Youying Mao5, Ronen Schneider6, Jianghua Chen1,2,3, Hong Jiang1,2,3, Jianyong Wu1,2,3.   

Abstract

BACKGROUND: Hereditary renal hypouricemia (HRH) is a genetically heterogenetic disease. Patients with HRH are almost asymptomatic; but some may experience exercise-induced acute kidney injury (EAKI) and nephrolithiasis which may bring concerns regarding the risk-benefit ratio as marginal kidney donors. This study examined the pathogenic mutations of hypouricemia in two recipients after receiving kidney transplantation, providing preliminary evidence for the mechanism of hypouricemia.
METHODS: Two participants underwent detailed biochemical examinations. DNA and RNA were extracted from transplant specimens for sequencing. The whole-genome sequencing and polymerase chain reaction (PCR) amplification were performed to confirm the pathogenic genes. Functional effects of mutant proteins were verified by bioinformatics analysis. RNA-sequencing (RNA-seq) was used to study the transcriptome of hypouricemia.
RESULTS: Both of the recipients had the low serum uric acid (UA) (45-65 µmol/l), high fraction excretion of UA (44% and 75%) and an increase in the UA clearance (35.9 and 73.3 mL/min) with a functioning graft. The sequencing analyses revealed 7 kinds of potential mutational genes in this case, two novel mutations p.R89H and p.L181V in SLC22A12 gene which were revealed by bioinformatics could be pathogenic in nature.
CONCLUSIONS: Two novel mutations of SLC22A12 were identified. Preliminary functional analysis revealed a potential deleterious effect of these mutations in the grafts derived from the donor and sequencing analysis expand the molecular mechanisms of renal hypouricemia. 2020 Annals of Translational Medicine. All rights reserved.

Entities:  

Keywords:  Hereditary renal hypouricemia (HRH); SLC22A12; kidney transplantation; single nucleotide polymorphism (SNP)

Year:  2020        PMID: 32355774      PMCID: PMC7186701          DOI: 10.21037/atm.2020.02.140

Source DB:  PubMed          Journal:  Ann Transl Med        ISSN: 2305-5839


Introduction

Hereditary renal hypouricemia (HRH) is a hereditary and heterogenetic disorder characterized by defective tubular uric acid (UA) transport, reabsorption insufficiency, and/or increased renal urate clearance resulting from the loss-of-function mutations in UA transport genes (1). HRH patients are mostly asymptomatic but 10% of the patients are susceptible to exercise-induced acute renal failure (EIARF) and/or nephrolithiasis, while 20% of them are afflicted by hypercalciuria, which can lead to nephrocalcinosis in the distal tubules (2-4). Currently, two biochemical parameters are in use to diagnose HRH: (I) serum UA concentration less than 2 mg/dL (equivalent to 119 µmol/L), and (II) more than 10% fractional excretion of UA (5,6). In Japan, the rate of HRH incidence is reportedly about 2.54% among hospitalized patients and 0.12–0.72% in the general population (7-9). The first successful genetically matched kidney transplantation for HRH was reported in 2006 (10). In 2016, a kidney transplant recipient patients with HRH reported a rare case of nephrocalcinosis in the distal tubules three months after transplant surgery (4). Other than these sporadic reports, there is a dearth of scientific data on the transmission of renal hypouricemia in irrelevant donor-recipient transplantation. Over the past decade, genome-wide association studies and case reports have shown an increase in the number of genetic variants that influence serum UA concentrations, such as SLC2A9, SLC22A12, SLC17A3, and ABCG2 (11,12). Single nucleotide polymorphisms (SNPs) in regulatory regions (rSNPs) modulate levels of gene expression in an allele-specific manner; however, there is lack of such studies in kidney transplantation research. Further, majority of published studies on hypouricemia includes case report or case series, which lack essential statistical analysis and comparison with healthy controls. Herein, we present two unrelated recipients who had no history of hypouricemia before renal transplantation but experienced sudden and unexpected hypouricemia after receiving transplants from a donor of different genetic background. We performed a DNA sequencing analysis in one healthy control and two kidney transplant recipients and followed up for 3.5 years after their surgery. Our results showed differential gene expression profile between healthy individuals and HRH patients and indicated possible pathogenic pathways associated with disease onset and progression.

Methods

Biochemical and ultrasound evaluation

To evaluate the factors associated with hypouricemia, we checked parameters such as blood biochemistry and urine routine for the UA metabolism, renal tubular acidosis and urine electrolytes, and the liver was examined by ultrasound.

Tissue samples

Two of the three transplant specimens were collected at the time of transplantation and preserved at the hospital, while the other transplant specimen was collected in recipient 1 followed up for 3.5 years after transplantation surgery. Renal biopsy tissue was obtained from a live healthy renal transplant-recipient and the sample was used as the healthy control (). The study details were explained to all the participants, and a signed informed consent was obtained after their agreement. Extraction of DNA was performed using the Axyprep™ Blood Genomic DNA Miniprep Kit (Axyprep, USA) following the manufacturer’s recommendations. DNA was eluted in approximately 100 µL of buffer AE. DNA integrity was checked on 1% agarose gel and purity were checked using the NanoPhotometer® spectrophotometer (IMPLEN, CA, USA). DNA was quantified using Qubit® DNA Assay Kit in Qubit® 2.0 Flurometer (Life Technologies, CA, USA).
Figure 1

Clinical data of the patients. (A) We collected the implants transplanted into the two recipients immediately (S1 and S2) and followed for three and a half years post-transplantation (S3) and a healthy control (HC). Variation of serum creatinine (B) and uric acid (C) within years of follow-up in the two recipients.

Clinical data of the patients. (A) We collected the implants transplanted into the two recipients immediately (S1 and S2) and followed for three and a half years post-transplantation (S3) and a healthy control (HC). Variation of serum creatinine (B) and uric acid (C) within years of follow-up in the two recipients.

Library preparation and sequencing

A total of 700 ng DNA from each sample was used as the input material for the DNA library preparations. Sequencing libraries were generated using NEB Next® Ultra DNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. The NEB Next Adaptor with hairpin loop structure were ligated to 3' adenylated DNA fragments to prepare for hybridization and electrophoresis was carried out to select DNA fragments of specified length. Subsequently, 3 µL USER Enzyme (NEB, USA) was used with size-selected DNA at 37 °C for 15 min and 95 °C 5 min before carrying out polymerase chain reaction (PCR). PCR was performed with Phusion High-Fidelity DNA polymerase, Universal PCR primers, and Index (X) Primer to enrich final adaptor modified fragmented sample. Finally, the library fragments were purified using AMPure XP system (Beckman Coulter, Beverly, USA). The clustering of the index-coded samples was performed on a cBot Cluster Generation System using HiSeq 2500 PE Cluster Kit (Illumina) according to the manufacturer’s instructions. After cluster generation, the library preparations were sequenced on an Illumina Hiseq 2500 platform.

PCR amplification and sequence analysis

The genomic DNA was isolated from the transplant samples obtained from the recipients and live donors using the AxyprepTM Blood Genomic DNA Miniprep Kit (Axyprep, USA). Seven pairs of oligonucleotide primers were generated to amplify the different regions obtained from DNA sequencing and were sequenced directly. A total of 80 ng of genomic DNA was amplified in 20 µL reaction volume containing 10 µL Premix Taq (TaKaRa) and 0.8 µM primers. Amplification products were purified on 1.5% agarose gel using 0.5× TBE buffer and Wizard SV gel and Gel/PCR DNA Fragments Extraction Kit (Promega, USA). DNA sequencing was performed with an automated DNA sequencer (Applied Biosystems 3730-Avant Genetic Analyzer; Applied Biosystems, USA).

RNA isolation and cDNA library construction

Total RNA was extracted from implants of two kidney transplant recipient using Trizol reagent (Invitrogen, USA), and RNase-free DNase I (TaKaRa, Japan) following the manufacturer’s protocol. One was the healthy control and the other was recipient1 after three and a half years post-transplantation. A total of 1.5 µg of RNA per sample was used as input material for RNA sample reparations. The differentially expressed genes were detected using an Affymetrix Mouse Genome 430 2.0 microarray (Thermo Fisher Scientific). The experimental procedures for microarray were performed at the Hangzhou Tianke Corporation (Hangzhou, China). The clustering of the index-coded samples was performed on a cBot Cluster Generation System using the TruSeq SR Cluster Kit v3-cBot-HS (Illumina) according to the manufacturer’s instructions. After the cluster generation, the library preparations were sequenced on an Illumina HiSeq 2500 platform.

Results

Clinical and biochemical investigations

On September 2012, a 41-year-old male (recipient 1) and a 37-year-old female (recipient 2) with end-stage renal disease caused by chronic kidney disease (CKD) received renal transplantation from a deceased donor who had died from craniocerebral injury. On admission, they had a serum creatinine of 1,004 and 823 µmol/L (). Recipient 1 had a gradually increased serum creatinine (S-Cr) level beginning in 2000 diagnosed as IgA nephritis and started on hemodialysis at the age of 34 years. Serum creatinine level gradually increased in recipient 2 for 8 years and she began hemodialysis at the age of 35 years. The donor was a 30-year-old male (serum creatinine: 79 µmol/L) with no significant past medical history (). Within the first week of transplant, the serum creatinine levels decreased to 76 and 49 µmol/L respectively (). In addition, their physical examination, laboratory examination and grafts biopsy at zero time were uneventful and they were released from the hospital after great recovery. Both of them received triple immunosuppressive therapy consisting of cortico-steroids, mycophenolate mofetil, and tacrolimus. Since then, the two recipients have reported fluctuating low serum UA levels (patient 1: 55–65 µmol/L, normal serum creatinine: 70–80 µmol/L; patient 2: 45–55 µmol/L, normal serum creatinine 60–70 µmol/L) (). We confirmed a well-functioning kidney graft (serum creatinine 82 µmol/L, eGFR 102 mL/min and serum creatinine 60 µmol/L, eGFR 109 mL/min respectively) with no proteinuria or haematuria after three years the transplantation except for the high fraction excretion of UA (FEUA) of 44% and 75% (normal <10%) and UA clearance of 35.9 and 73.3 mL/min (normal 7.3–14.7 mL/min). We reviewed the results of pre-operative laboratory examinations of donor and found that the donor had a very low serum UA of 48 µmol/L. Our findings suggested that the low serum UA in two recipients could be associated with HRH, and therefore, molecular genetic analysis was performed to confirm the same.
Table 1

Laboratory data on admission

Biochemical dateRecipient 1Recipient 2
GenderMaleFemale
Age (years)4137
Complete blood cell count
   WBC (×109/L)7.66.3
   Hemoglobin (g/dL)11883
   Hematocrit (%)35.726.7
   Platelets (×109/L)145128
Serum chemistries
   Total protein (g/L)87.6
   Albumin (g/L)50.745
   BUN (mg/dL)17.117.6
   Cr (μmol/L)1004823
   Uric acid (μmol/L)378431
   Sodium (mmol/L)137132
   Potassium (mmol/L)4.973.7
   Chloride (mmol/L)9789
   Calcium (mmol/L)2.752.5
   Phosphorus (mmol/L)2.291.6
Urinalysis
   pH5.58.5
   Specific gravity1.0141.008
   Protein++++
   Occult blood++++++
   WBC sediment (/HPF)1–30–2

UA transporter genes analysis

PCR followed by DNA sequence analysis revealed 7 types of mutations. Probands were heterozygous for the unpublished missense mutation p.Q141K(c.C421A) in exon 5 and p.Q126X(c.C376T) in exon 4 in the ABCG2 and heterozygous for the unidentified missense mutation p.R89H(c.G266A) and p.L181V(c.C541G) in exon 1 in the SLC22A12 gene. Variants p.R89H and p.L181V are novel and have not yet been identified in SLC22A12 gene. Moreover, the nature of these mutations appears pathogenic as per the PolyPhen software (http://genetics.bwh.harvard.edu/pph2/) indicates that substitutions in SLC22A12 were probably damaging (score of 0.809; sensitivity 0.84; specificity 0.93 and score of 0.996; sensitivity 0.55; specificity 0.98, respectively). Other variations, one homozygous exon variant (p.R294H) and one heterozygous exon variant (p.A100T) have been previously reported (, ).
Figure 2

Mutations found in implants (S1, S2, S3) with hereditary hypouricemia. (A) The homozygous mutation of SLC2A9-p.R294H (c.G881A) discovered in the implants (S1, S2, S3) and the healthy control had happened to find the heterozygous mutation as well; (B) the other mutations discovered in this study; (C) SLC22A12 p.R89H mutation is predicted to be possibly damaging with a score of 0.809 (sensitivity: 0.84; specificity: 0.93); p.L181V mutation is predicted to be probably damaging with a score of 0.996 (sensitivity: 0.55; specificity: 0.98).

Table 2

Sequence variations of coding regions in candidate genes between the implants transplanted into the two recipients immediately (S1 and S2) and followed for three and a half years post-transplantation (S3) and a healthy control (HC)

ChrExonSNPNucleotide changeAmino acid changeHCS1S2S3GenePreviously reported
47C>Tc.G881Ap.R294HHeterHomoHomoHomoSLC2A9Yes
45G>Tc.C421Ap.Q141KNoneHeterHeterHeterABCG2No
44G>Ac.C376Tp.Q126XNoneHeterHeterHeterABCG2No
63C>Tc.G298Ap.A100TNoneHeterHeterHeterSLC17A3Yes
111G>Ac.G266Ap.R89HNoneHeterHeterHeterSLC22A12No
111C>Gc.C541Gp.L181VNoneHeterHeterHeterSLC22A12No
138C>Ac.G912Tp.K304NNoneHeterHeterHeterABCC4No

SNP, single nucleotide polymorphism.

Mutations found in implants (S1, S2, S3) with hereditary hypouricemia. (A) The homozygous mutation of SLC2A9-p.R294H (c.G881A) discovered in the implants (S1, S2, S3) and the healthy control had happened to find the heterozygous mutation as well; (B) the other mutations discovered in this study; (C) SLC22A12 p.R89H mutation is predicted to be possibly damaging with a score of 0.809 (sensitivity: 0.84; specificity: 0.93); p.L181V mutation is predicted to be probably damaging with a score of 0.996 (sensitivity: 0.55; specificity: 0.98). SNP, single nucleotide polymorphism.

Gene expression analysis by RNA-sequencing (RNA-seq)

To study the effect of mutations on the gene expression, we analyzed the transcriptomes of the transplant tissues by RNA-seq (). Analysis of the RNA-seq data revealed that a total of 57 genes were differentially regulated among the hypouricemia patients and the healthy controls (fold change >2, P value <0.05). Out of 57 gene, 21 were upregulated, while 36 genes were down regulated. We used unsupervised clustering hierarchy () and the details of the differentially expressed genes are given in . KEGG pathway analysis revealed that the differentially expressed genes were played roles in hematopoietic cell lineage, T cell receptor signaling pathway, cancer related pathways, MAPK signaling pathway, and other important regulatory processes ().
Table S1

The value of differentially expressed genes in hypouricemia

Gene symbolValue controlValue renal hypouricemialog2 (fold change)P value  Biological process
AK4 80.81620.391208−7.690570.043357ATP metabolic process
PTPRC 3.75744767.9747.675170.015972Immunoglobulin biosynthetic process
CR1 1.0382338.58925.215990.043357Complement receptor mediated signaling pathway
S100A4 43.39913757.786.436070.027141Epithelial to mesenchymal transition
MUC1 137.4031.12964−6.926410.007747DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
LYST 2.0913444.6664.416680.018538T cell mediated immunity
CELF2 1.1729389.93446.260680.007747RNA processing
TSPAN32 1.0368550.3965.603030.035989Negative regulation of cell proliferation
NAV2 6.799020.032998−7.686790.018538Regulation of systemic arterial blood pressure by baroreceptor feedback
C11orf54 243.975.42007−5.492250.048447Metabolic process
STK33 3.860330.047077−6.357570.044526Protein autophosphorylation
KCNJ1 53.66410.363949−7.204080.027141Kidney development
SLC2A14 1.40047136.5966.607860.028838Multicellular organismal development
CLEC7A 1.14152181.9467.316410.035989Pattern recognition receptor signaling pathway
ARHGAP9 2.00949141.7986.140870.007747Small gtpase mediated signal transduction
TRA 18.6176679.8565.190490.007747
NDRG2 63.71393.18928−4.320310.043357Negative regulation of cytokine production
SLC9A3R2 75.06471.82555−5.361730.007747Protein complex assembly
NLRC5 3.8849453.42413.781530.007747Positive regulation of type I interferon-mediated signaling pathway
FMNL1 4.68808223.5255.57530.012214Cortical actin cytoskeleton organization
TMC8 2.1973997.7975.475920.035989Regulation of cell growth
UNC13D 1.6485758.16475.140860.021719Positive regulation of exocytosis
TNRC6C-AS1 8.1972187.84463.421750.032078
ZBTB7C 0.8515210.090405−3.235570.027141Immune response
KIR2DL3 0.34484325.40956.203280.007747
DMKN 22.41490.978012−4.518460.041821
NFKBID 62.22062800.485.492140.034038Inflammatory response
LILRB3 2.73845526.0517.58570.007747Adaptive immune response
UGT1A8 427.9030.162788−11.36010.007747Negative regulation of steroid metabolic process
KCNJ15 140.1735.13269-4.771350.030624Potassium ion transport
ITGB2-AS1 1.4649240.91334.803680.034038
GGT1 205.46513.256−3.954180.041821Regulation of immune system process
CECR1 5.01392151.3284.91560.040912Adenosine catabolic process
ABI3BP 5.276520.01453−8.504410.04645Positive regulation of cell-substrate adhesion
DDX60 3.142936.6943.545380.032078Positive regulation of MDA-5 signaling pathway
SORBS2 12.16550.050895−7.901050.043357Cell growth involved in cardiac muscle cell development
IL7R 0.82996659.26236.157920.044526Regulation of DNA recombination
VCAN 1.18801573.6098.915370.007747Skeletal system development
PCDHGA1 32.34322.55042−3.664660.037849Homophilic cell adhesion via plasma membrane adhesion molecules
LST1 5.50722464.1196.397030.007747Negative regulation of lymphocyte proliferation
FGD2 2.7951665.81584.557430.012214Regulation of small gtpase mediated signal transduction
MYB 0.0358181.135684.98670.007747G1/S transition of mitotic cell cycle
DST 21.85561.26056−4.115860.028838Maintenance of cell polarity
PARK2 6.040090.042097−7.16470.007747Positive regulation of mitochondrial fusion
IKZF1 0.64656558.61866.502420.040912Lymphocyte differentiation
EF070117 8.705260.170523−5.673850.007747
MET 8.682940.047729−7.507190.027141Negative regulation of hydrogen peroxide-mediated programmed cell death
TCRBV2S1 19.5629635.7245.022210.007747
ETV1 1.524240.054565−4.803980.043357Positive regulation of transcription from RNA polymerase II promoter
MYO1G 1.31113157.8216.911330.041821Fc-gamma receptor signaling pathway involved in phagocytosis
GLIPR2 2.81901205.9336.190840.044526Positive regulation of epithelial to mesenchymal transition
TRPM3 12.16870.009194−10.37020.037849Sensory perception of temperature stimulus
Figure 3

Screening for differentially expressed genes in hypouricemia. (A) The clustering of differential genes in heatmap. The color in the heatmap represents the log 2-fold change of expression values. Text on the right of heatmap indicates the enriched gene ontology terms for each cluster of genes; (B) top 30 pathways from Kyoto Encyclopedia of Genes and Genomes enrichment analysis. The x-axis represents KEGG enrichment scores and the y-axis represents pathway terms. The colors of circle indicate P values and the size of circle indicates the numbers of differential RNAs. The circle with redder and larger indicating that the enrichment of the pathway is higher and differential RNAs number is larger in the pathway.

Table 3

Other SNP sites found in transplants and possible pathways

GeneSNP IDChrRisk allelePossible pathway
EGFRrs624529027APathways in cancer
MAPK signaling pathway
Regulation of actin cytoskeleton
Cytokine-cytokine receptor interaction
IL7Rrs100584535THematopoietic cell lineage
Jak-STAT signaling pathway
Cytokine-cytokine receptor interaction
GHRrs41466245AJak-STAT signaling pathway
Cytokine-cytokine receptor interaction

SNP, single nucleotide polymorphism; GHR, growth hormone receptor.

Screening for differentially expressed genes in hypouricemia. (A) The clustering of differential genes in heatmap. The color in the heatmap represents the log 2-fold change of expression values. Text on the right of heatmap indicates the enriched gene ontology terms for each cluster of genes; (B) top 30 pathways from Kyoto Encyclopedia of Genes and Genomes enrichment analysis. The x-axis represents KEGG enrichment scores and the y-axis represents pathway terms. The colors of circle indicate P values and the size of circle indicates the numbers of differential RNAs. The circle with redder and larger indicating that the enrichment of the pathway is higher and differential RNAs number is larger in the pathway. SNP, single nucleotide polymorphism; GHR, growth hormone receptor.

Relationship between gene mutation and expression levels

We tried to elucidate the relationship between SNPs, gene expression, and phenotypes together. Mutation analysis findings point towards epithelial growth factor (EGF) receptor (EGFR), IL-7 receptor (IL7R) and growth hormone receptor (GHR) which could implicate the important role in transcriptional regulation through cancer related pathways, MAPK signaling pathway, regulation of actin cytoskeleton cytokine-cytokine receptor interaction, hematopoietic cell lineage, and Jak-STAT signaling pathway to exert their influence on the phenotypes ().

Discussion

HRH, is defined arbitrarily as serum UA concentration less than 119 µmol/L and increased fractional excretion of uric acid (FEUA) and/or uric acid clearance (CUA), with exclusion of other diseases that present hypouricemia as a symptom (13). Loss-of-function mutations in the SLC22A12 gene coding the UA transporter 1 (URAT1) and SLC2A9 gene coding the glucose transporter (GLUT9) caused type 1 (RHUC1) and 2 (RHUC2), respectively. Most renal hypouricemia is caused by mutations in the SLC22A12 gene. The high incidence of RHUC1 has been reported in the Asia region and Roma ethnicity. The allele frequency of c.774G>A (p.W258X) and c.269G>A (p.R90H) were 2.37% and 0.40% in SLC22A12 among Japanese and Koreans (14,15). Frequencies of the c.1245_1253del and c.1400C>T variants were present in the Roma population at 1.87% and 5.56%, respectively (16,17).Several GWAS have indicated a substantial association between urate concentration and SNPs at 10 genetic loci including transporter-coding genes such as SLC2A9 (GLUT9), ABCG2 (BCRP), SLC17A1 (NPT1), SLC17A3 (NPT4), SLC17A4 (provisionally named as NPT5), SLC22A11 (OAT4), SLC22A12 (URAT1), and SLC16A9 (MCT9) as well as urate transport related scaffolding protein PDZK1 (18). However, Hurba et al. (19) reported the non-synonymous allelic variants on of GLUT9 were not related to urate uptake activity. But several studies reported clear function impact of GLUT9 variants in patients with renal hypouricemia 2 (20-22). For example, Dinour et al. (23) reported that homozygous mutations of GLUT9 cause a total defect of UA absorption and are associated with a high incidence of renal calculus and EIAKI and nephrolithiasis. Previously, a successful living-related kidney transplant has been reported in HRH. Both the donor and the recipient had the same disorder of urate metabolism and were homozygous for G774A before kidney transplantation (10). Another rare case reported nephrocalcinosis in the distal tubules caused by HRH in a living-donor renal transplantation. Genetic analysis revealed a heterozygous nonsense mutation of C889T in exon 5 of the urate transporter 1 (URAT1) gene in both, the donor and the recipient (4). In this study, we present a rather rare case of donor-derived HRH. To the best of our knowledge, this is the first report to show that unrelated recipients can acquire unexpected hypouricemia after kidney transplantation from the same donor with a different genetic background. DNA analysis was performed on the tissue before being transplanted into the two recipients. The cases and a control were followed for 3.5 years post-transplantation. Our results showed that the mutated genes in the grafts of the donor remained unchanged after transplantation in a different un-URH environment up to the follow-up duration of 3.5 years. Many non-pathogenic single point mutations identified in the present study have been reported earlier and included the homozygous missense mutation, p.R294H in SLC2A9 in exon 7 (24) and a heterozygous sequence variant, p.A100T in SLC17A3 in exon 3 (25). We could not confirm the nosogenetic mutations from the family of the deceased donor. Therefore, the effect of previously unreported mutations on the hypouricemia remains unknown and needs to be answered in future. Genetic variants have been associated with many human diseases. However, about 88% of the GWAS-nominated SNPs are in intronic or intergenic regions suggesting that the noncoding regions of the genome can contribute to the disease risk, and may be involved in gene regulation. However, the underlying mechanism by remains unclear (26). SNPs can modulate the gene expression through a change in chromatic structure to distance a gene from its enhancers and by altering the copy number (27). Within each susceptibility locus, candidate risk genes have been prioritized based largely on bioinformatic evaluations of the relationships among genes, the presence of coding SNPs, or the gene expression-genotype correlations (28-30). Regulatory and coding variants often modify the functional impact of each other that can be detected by the sequencing data. Characterizing these mutual effects might help us understand functional mechanisms behind genetic associations to human phenotypes (31). For example mutational signatures related to liver carcinogenesis revealed frequently mutated coding and noncoding regions, such as long intergenic noncoding RNA genes (NEAT1 and MALAT1), promoters, CTCF-binding sites, and regulatory regions (32). Biswajit et al. unveiled rs2279590 at PTK2B–CLU locus, a risk factor previously associated with Alzheimer’s disease, to have an enhancer effect on two nearby genes coding for protein tyrosine kinase 2 beta (PTK2B) and epoxide hydrolase-2 (EPHX2) (33). Based on these results, we speculate that defects in DNA sequences could probably affect tubule function through differential RNA expression. DNA mutation analysis have identified three risk loci that increase renal hypouricemia risk: (I) SNP (rs62452902) at EGFR locus, (II) SNP (rs10058453) at IL7R locus, (III) SNP (rs4146624) at GHR. We performed enrichment analysis from the data of the differentially expressed genes and identified that pathways related to cancers, MAPK signaling, regulation of actin cytoskeleton, cytokine-cytokine receptor interaction, hematopoietic cell lineage, and Jak-STAT signaling were significantly altered in hypouricemia transplant tissue, indicating that these pathway may be involved in the disease. EGF risk alleles may upregulate pathways related to cancer, MAPK signaling, alter actin cytoskeleton, and cytokine-cytokine receptor interactions to promote elevated blood UA by impacting UA metabolism and inhibiting UA excretion. Though our study presents interesting findings, its limitations include small number of cases and therefore requirement of further work to validate this work.

Conclusions

We report a renal transplantation case of donor-derived hypouricemia caused by mutations in the transplant tissue of donor with HRH. Seven kinds of potent mutations were discovered in this case, including two novel mutations which could be pathogenic in nature. However, further studies are needed to prove the role of these mutations in HRH pathogenicity.
  33 in total

1.  Successful living-related kidney transplantation in hereditary renal hypouricaemia.

Authors:  Izumi Yamamoto; Hiroyasu Yamamoto; Kimiyoshi Ichida; Jun Mitome; Yudo Tanno; Naohiko Katoh; Keitaro Yokoyama; Tatsuo Hosoya
Journal:  Nephrol Dial Transplant       Date:  2006-01-31       Impact factor: 5.992

2.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

3.  Two novel homozygous SLC2A9 mutations cause renal hypouricemia type 2.

Authors:  Dganit Dinour; Nicola K Gray; Liat Ganon; Andrew J S Knox; Hanna Shalev; Ben-Ami Sela; Susan Campbell; Lindsay Sawyer; Xinhua Shu; Evgenia Valsamidou; Daniel Landau; Alan F Wright; Eliezer J Holtzman
Journal:  Nephrol Dial Transplant       Date:  2011-08-02       Impact factor: 5.992

4.  Prevalence of URAT1 allelic variants in the Roma population.

Authors:  Blanka Stiburkova; Dana Gabrikova; Pavel Čepek; Pavel Šimek; Pavol Kristian; Elizabeth Cordoba-Lanus; Felix Claverie-Martin
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2016-12       Impact factor: 1.381

5.  Novel homozygous insertion in SLC2A9 gene caused renal hypouricemia.

Authors:  Blanka Stiburkova; Kimiyoshi Ichida; Ivan Sebesta
Journal:  Mol Genet Metab       Date:  2011-01-04       Impact factor: 4.797

6.  A high prevalence of renal hypouricemia caused by inactive SLC22A12 in Japanese.

Authors:  Naoharu Iwai; Yukari Mino; Makoto Hosoyamada; Naomi Tago; Yoshihiro Kokubo; Hitoshi Endou
Journal:  Kidney Int       Date:  2004-09       Impact factor: 10.612

Review 7.  Rare case of nephrocalcinosis in the distal tubules caused by hereditary renal hypouricaemia 3 months after kidney transplantation.

Authors:  Yusuke Okabayashi; Izumi Yamamoto; Yo Komatsuzaki; Takahito Niikura; Takafumi Yamakawa; Haruki Katsumata; Mayuko Kawabe; Ai Katsuma; Yasuyuki Nakada; Akimitsu Kobayashi; Yusuke Koike; Jun Miki; Hiroki Yamada; Yudo Tanno; Ichiro Ohkido; Nobuo Tsuboi; Kimiyoshi Ichida; Hiroyasu Yamamoto; Takashi Yokoo
Journal:  Nephrology (Carlton)       Date:  2016-07       Impact factor: 2.506

8.  Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer.

Authors:  Akihiro Fujimoto; Mayuko Furuta; Yasushi Totoki; Tatsuhiko Tsunoda; Mamoru Kato; Yuichi Shiraishi; Hiroko Tanaka; Hiroaki Taniguchi; Yoshiiku Kawakami; Masaki Ueno; Kunihito Gotoh; Shun-Ichi Ariizumi; Christopher P Wardell; Shinya Hayami; Toru Nakamura; Hiroshi Aikata; Koji Arihiro; Keith A Boroevich; Tetsuo Abe; Kaoru Nakano; Kazuhiro Maejima; Aya Sasaki-Oku; Ayako Ohsawa; Tetsuo Shibuya; Hiromi Nakamura; Natsuko Hama; Fumie Hosoda; Yasuhito Arai; Shoko Ohashi; Tomoko Urushidate; Genta Nagae; Shogo Yamamoto; Hiroki Ueda; Kenji Tatsuno; Hidenori Ojima; Nobuyoshi Hiraoka; Takuji Okusaka; Michiaki Kubo; Shigeru Marubashi; Terumasa Yamada; Satoshi Hirano; Masakazu Yamamoto; Hideki Ohdan; Kazuaki Shimada; Osamu Ishikawa; Hiroki Yamaue; Kazuki Chayama; Satoru Miyano; Hiroyuki Aburatani; Tatsuhiro Shibata; Hidewaki Nakagawa
Journal:  Nat Genet       Date:  2016-04-11       Impact factor: 38.330

9.  Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Authors:  Luke Jostins; Stephan Ripke; Rinse K Weersma; Richard H Duerr; Dermot P McGovern; Ken Y Hui; James C Lee; L Philip Schumm; Yashoda Sharma; Carl A Anderson; Jonah Essers; Mitja Mitrovic; Kaida Ning; Isabelle Cleynen; Emilie Theatre; Sarah L Spain; Soumya Raychaudhuri; Philippe Goyette; Zhi Wei; Clara Abraham; Jean-Paul Achkar; Tariq Ahmad; Leila Amininejad; Ashwin N Ananthakrishnan; Vibeke Andersen; Jane M Andrews; Leonard Baidoo; Tobias Balschun; Peter A Bampton; Alain Bitton; Gabrielle Boucher; Stephan Brand; Carsten Büning; Ariella Cohain; Sven Cichon; Mauro D'Amato; Dirk De Jong; Kathy L Devaney; Marla Dubinsky; Cathryn Edwards; David Ellinghaus; Lynnette R Ferguson; Denis Franchimont; Karin Fransen; Richard Gearry; Michel Georges; Christian Gieger; Jürgen Glas; Talin Haritunians; Ailsa Hart; Chris Hawkey; Matija Hedl; Xinli Hu; Tom H Karlsen; Limas Kupcinskas; Subra Kugathasan; Anna Latiano; Debby Laukens; Ian C Lawrance; Charlie W Lees; Edouard Louis; Gillian Mahy; John Mansfield; Angharad R Morgan; Craig Mowat; William Newman; Orazio Palmieri; Cyriel Y Ponsioen; Uros Potocnik; Natalie J Prescott; Miguel Regueiro; Jerome I Rotter; Richard K Russell; Jeremy D Sanderson; Miquel Sans; Jack Satsangi; Stefan Schreiber; Lisa A Simms; Jurgita Sventoraityte; Stephan R Targan; Kent D Taylor; Mark Tremelling; Hein W Verspaget; Martine De Vos; Cisca Wijmenga; David C Wilson; Juliane Winkelmann; Ramnik J Xavier; Sebastian Zeissig; Bin Zhang; Clarence K Zhang; Hongyu Zhao; Mark S Silverberg; Vito Annese; Hakon Hakonarson; Steven R Brant; Graham Radford-Smith; Christopher G Mathew; John D Rioux; Eric E Schadt; Mark J Daly; Andre Franke; Miles Parkes; Severine Vermeire; Jeffrey C Barrett; Judy H Cho
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

Review 10.  Recurrent exercise-induced acute kidney injury by idiopathic renal hypouricemia with a novel mutation in the SLC2A9 gene and literature review.

Authors:  Huijun Shen; Chunyue Feng; Xia Jin; Jianhua Mao; Haidong Fu; Weizhong Gu; Ai'min Liu; Qiang Shu; Lizhong Du
Journal:  BMC Pediatr       Date:  2014-03-14       Impact factor: 2.125

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  2 in total

Review 1.  Renal hypouricemia in a recipient of living-donor kidney transplantation: a case report and literature review.

Authors:  Takamasa Miyauchi; Maho Terashita; Masatomo Ogata; Marie Murata; Kiyomi Osako; Naohiko Imai; Yuko Sakurai; Hideo Sasaki; Yuki Ohashi; Kimiyoshi Ichida; Yugo Shibagaki; Masahiko Yazawa
Journal:  CEN Case Rep       Date:  2021-09-23

2.  Assessing the Global Impact on the Mouse Kidney After Traumatic Brain Injury: A Transcriptomic Study.

Authors:  Wei-Chih Kan; Yi-Lin Chiu; Wei-Hung Chan; Yu-Juei Hsu; Chiao-Pei Cheng; Kuan-Nien Chou; Chin-Li Chen; Shih-Ming Huang
Journal:  J Inflamm Res       Date:  2022-08-24
  2 in total

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