| Literature DB >> 32351633 |
Renata Suchanek-Raif1,2, Paweł Raif3, Małgorzata Kowalczyk1,2, Monika Paul-Samojedny1,2, Aleksandra Zielińska1,2, Krzysztof Kucia4,5, Wojciech Merk4,5, Jan Kowalski1,2.
Abstract
AIM: The BDNF dysfunction in the schizophrenia has been soundly documented. The TrkB gene is a high-affinity receptor of the BDNF that is changed in schizophrenia and mood disorders. The study had two aims: first, to identify whether the five nucleotide polymorphisms (SNPs) in TrkB gene are associated with a diagnosis of schizophrenia; and the latter, if any association exists between the TrkB SNPs and psychopathology, suicide attempts, and family history of schizophrenia in a Caucasian population.Entities:
Mesh:
Substances:
Year: 2020 PMID: 32351633 PMCID: PMC7174942 DOI: 10.1155/2020/4789806
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Analysis of genotype and allele distributions five SNPs TrkB gene for the whole population and stratified by sex.
| SNP | Genotype | Control | Patients |
|
| Male |
|
| Female |
|
| ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Control | Patients | Control | Patients | ||||||||||
| rs1867283 | G/G | 180 (27) | 98 (24) | 2.44 | 0.29 | 100 (29) | 56 (23) | 3.65 | 0.16 | 80 (26) | 42 (27) | 0.23 | 0.88 |
| G/A | 309 (47) | 184 (46) | 153 (45) | 109 (45) | 156 (49) | 75 (47) | |||||||
| A/A | 168 (26) | 119 (30) | 89 (26) | 77 (32) | 79 (25) | 42 (26) | |||||||
| G | 669 (51) | 308 (47) | 2.34 | 0.12 | 353 (52) | 221 (46) | 3.77 | 0.06 | 316 (49) | 159 (50) | 0.01 | 0.99 | |
| A | 645 (49) | 422 (53) | 331 (48) | 263 (54) | 314 (51) | 159 (50) | |||||||
|
| |||||||||||||
| rs1565445 | A/A | 333 (51) | 208 (52) | 1.09 | 0.57 | 173 (50) | 128 (53) | 1.22 | 0.54 | 160 (51) | 80 (50) | 0.19 | 0.90 |
| A/G | 259 (39) | 161 (40) | 133 (39) | 96 (39) | 126 (40) | 66 (42) | |||||||
| G/G | 65 (10) | 32 (8) | 36 (11) | 19 (8) | 29 (9) | 13 (8) | |||||||
| A | 925 (70) | 577 (72) | 0.50 | 0.47 | 479 (70) | 351 (73) | 0.73 | 039 | 446 (70) | 226 (71) | 0.01 | 0.99 | |
| G | 389 (30) | 225 (28) | 205 (30) | 133 (27) | 184 (30) | 92 (29) | |||||||
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| |||||||||||||
| rs2769605 | C/C | 119 (18) | 86 (21) | 2.28 | 0.31 | 64 (19) | 49 (20) | 0.21 | 0.89 | 55 (18) | 37 (23) | 3.23 | 0.19 |
| C/T | 326 (50) | 183 (46) | 161 (47) | 112 (46) | 165 (52) | 71 (45) | |||||||
| T/T | 212 (32) | 132 (33) | 117 (34) | 81 (34) | 95 (30) | 51 (32) | |||||||
| C | 564 (43) | 355 (44) | 0.31 | 0.57 | 289 (42) | 210 (43) | 0.11 | 0.74 | 275 (44) | 145 (46) | 0.25 | 0.61 | |
| T | 750 (57) | 447 (56) | 395 (58) | 274 (57) | 355 (56) | 173 (54) | |||||||
|
| |||||||||||||
| rs10868235 | C/C | 153 (23) | 105 (26) | 1.14 | 0.56 | 86 (25) | 57 (24) | 0.22 | 0.89 | 68 (22) | 48 (30) | 4.4 | 0.11 |
| C/T | 334 (51) | 197 (49) | 173 (51) | 122 (50) | 161 (51) | 75 (47) | |||||||
| T/T | 170 (26) | 99 (25) | 84 (24) | 63 (26) | 86 (27) | 36 (23) | |||||||
| C | 640 (49) | 407 (51) | 0.75 | 0.38 | 343 (50) | 236 (49) | 0.16 | 0.68 | 297 (47) | 171 (54) | 3.5 | 0.06 | |
| T | 674 (51) | 395 (49) | 341 (49) | 248 (51) | 333 (52) | 147 (46) | |||||||
|
| |||||||||||||
| rs1387923 | A/A | 173 (27) | 76 (19) | 7.56 | <0.05 | 92 (27) | 45 (19) | 5.54 | 0.06 | 81 (26) | 31 (20) | 2.93 | 0.23 |
| A/G | 310 (47) | 210 (52) | 159 (46) | 122 (50) | 151 (48) | 88 (55) | |||||||
| G/G | 174 (26) | 115 (29) | 91 (27) | 75 (31) | 83 (26) | 40 (25) | |||||||
| A | 656 (50) | 362 (45) | 4.38 | <0.05 | 343 (50) | 212 (44) | 4.32 | <0.05 | 313 (50) | 150 (47) | 0.43 | 0.51 | |
| G | 658 (50) | 440 (55) | 341 (50) | 272 (56) | 317 (50) | 168 (53) | |||||||
Association between rs1387923 TrkB gene and risk of schizophrenia under different genetic models.
| Model | Genotype | Control | Schizophrenia | OR (95% CI) |
| AIC |
|---|---|---|---|---|---|---|
| Codominant | G/G | 174 (27%) | 115 (29%) | 1.0 |
| 1397.4 |
| G/A | 310 (47%) | 210 (52%) | 1.04 (0.77-1.39) | |||
| A/A | 173 (26%) | 76 (19%) |
| |||
|
| ||||||
| Recessive | G/G-G/A | 484 (74%) | 325 (81%) | 1.0 |
| 1395.5 |
| A/A | 173 (26%) | 76 (19%) |
| |||
Abbreviations: OR: odds ratio; CI: confidence interval.
Interaction analysis between rs1387923 and rs10868235 TrkB gene and sex on the risk of schizophrenia.
| Genotype | Sex | Control ( | Schizophrenia ( | OR (95% CI) |
|
|---|---|---|---|---|---|
| rs1387923 | |||||
| G/G | Female | 83 | 40 |
| |
| G/G | Male | 91 | 75 | 1.71 (1.05-2.78) |
|
| G/A | Male | 159 | 122 | 1.59 (1.02-2.48) |
|
| rs10868235 | |||||
| T/T | Female | 86 | 36 |
| |
| T/T | Male | 84 | 63 | 1.79 (1.08-2.98) |
|
| C/T | Male | 173 | 122 | 1.68 (1.07-2.65) |
|