Literature DB >> 32350410

Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel.

Laure Arsenieff1, Florence Le Gall2, Fabienne Rigaut-Jalabert3, Frédéric Mahé4, Diana Sarno5, Léna Gouhier6, Anne-Claire Baudoux2, Nathalie Simon7.   

Abstract

In the ocean, Bacillariophyta are one of the most successful protistan groups. Due to their considerable biogeochemical implications, diatom diversity, development, and seasonality have been at the center of research, specifically large-sized species. In comparison, nanoplanktonic diatoms are mostly disregarded from routine monitoring and are often underrepresented in genetic reference databases. Here, we identified and investigated the temporal dynamics of relevant nanodiatoms occurring in the Western English Channel (SOMLIT-Astan station). Coupling in situ and laboratory approaches, we revealed that nano-species from the genera Minidiscus and Thalassiosira are key components of the phytoplankton community that thrive in these coastal waters, but they display different seasonal patterns. Some species formed recurrent blooms whilst others were persistent year round. These results raise questions about their regulation in the natural environment. Over a full seasonal cycle at the monitoring station, we succeeded in isolating viruses which infect these minute diatoms, suggesting that these mortality agents may contribute to their control. Overall, our study points out the importance of considering nanodiatom communities within time-series surveys to further understand their role and fate in marine systems.

Mesh:

Year:  2020        PMID: 32350410      PMCID: PMC7367886          DOI: 10.1038/s41396-020-0659-6

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  20 in total

Review 1.  Diatoms and the ocean carbon cycle.

Authors:  V Smetacek
Journal:  Protist       Date:  1999-03

2.  Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity.

Authors:  S Y Moon-van der Staay; R De Wachter; D Vaulot
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

3.  Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water.

Authors:  Thorsten Stoeck; David Bass; Markus Nebel; Richard Christen; Meredith D M Jones; Hans-Werner Breiner; Thomas A Richards
Journal:  Mol Ecol       Date:  2010-03       Impact factor: 6.185

4.  Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.

Authors:  Cécile Lepere; Mikihide Demura; Masanobu Kawachi; Sarah Romac; Ian Probert; Daniel Vaulot
Journal:  FEMS Microbiol Ecol       Date:  2011-03-16       Impact factor: 4.194

5.  Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry.

Authors:  Dominique Marie; Florence Le Gall; Roseline Edern; Priscillia Gourvil; Daniel Vaulot
Journal:  J Phycol       Date:  2017-02-16       Impact factor: 2.923

6.  Dinoflagellates in evolution. A molecular phylogenetic analysis of large subunit ribosomal RNA.

Authors:  G Lenaers; L Maroteaux; B Michot; M Herzog
Journal:  J Mol Evol       Date:  1989-07       Impact factor: 2.395

7.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

8.  Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export.

Authors:  Karine Leblanc; Bernard Quéguiner; Frédéric Diaz; Véronique Cornet; Mónica Michel-Rodriguez; Xavier Durrieu de Madron; Chris Bowler; Shruti Malviya; Melilotus Thyssen; Gérald Grégori; Mathieu Rembauville; Olivier Grosso; Julie Poulain; Colomban de Vargas; Mireille Pujo-Pay; Pascal Conan
Journal:  Nat Commun       Date:  2018-03-05       Impact factor: 14.919

9.  SMS: Smart Model Selection in PhyML.

Authors:  Vincent Lefort; Jean-Emmanuel Longueville; Olivier Gascuel
Journal:  Mol Biol Evol       Date:  2017-09-01       Impact factor: 16.240

10.  The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.

Authors:  Laure Guillou; Dipankar Bachar; Stéphane Audic; David Bass; Cédric Berney; Lucie Bittner; Christophe Boutte; Gaétan Burgaud; Colomban de Vargas; Johan Decelle; Javier Del Campo; John R Dolan; Micah Dunthorn; Bente Edvardsen; Maria Holzmann; Wiebe H C F Kooistra; Enrique Lara; Noan Le Bescot; Ramiro Logares; Frédéric Mahé; Ramon Massana; Marina Montresor; Raphael Morard; Fabrice Not; Jan Pawlowski; Ian Probert; Anne-Laure Sauvadet; Raffaele Siano; Thorsten Stoeck; Daniel Vaulot; Pascal Zimmermann; Richard Christen
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

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  2 in total

1.  Complete mitochondrial genome of Thalassiosira profunda (Mediophyceae, Bacillariophyta).

Authors:  Kuiyan Liu; Shuya Liu; Yang Chen; Feng Liu; Yongfang Zhao; Nansheng Chen
Journal:  Mitochondrial DNA B Resour       Date:  2021-04-26       Impact factor: 0.658

2.  Seasonal dynamics of marine protist communities in tidally mixed coastal waters.

Authors:  Mariarita Caracciolo; Fabienne Rigaut-Jalabert; Sarah Romac; Frédéric Mahé; Samuel Forsans; Jean-Philippe Gac; Laure Arsenieff; Maxime Manno; Samuel Chaffron; Thierry Cariou; Mark Hoebeke; Yann Bozec; Eric Goberville; Florence Le Gall; Loïc Guilloux; Anne-Claire Baudoux; Colomban de Vargas; Fabrice Not; Eric Thiébaut; Nicolas Henry; Nathalie Simon
Journal:  Mol Ecol       Date:  2022-06-16       Impact factor: 6.622

  2 in total

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