Literature DB >> 32350400

The National Microbiome Data Collaborative: enabling microbiome science.

Elisha M Wood-Charlson1, Deanna Auberry2, Hannah Blanco3, Mark I Borkum2, Yuri E Corilo2, Karen W Davenport4, Shweta Deshpande1, Ranjeet Devarakonda3, Meghan Drake3, William D Duncan1, Mark C Flynn4, David Hays1, Bin Hu4, Marcel Huntemann1, Po-E Li4, Mary Lipton2, Chien-Chi Lo4, David Millard2, Kayd Miller1, Paul D Piehowski2, Samuel Purvine2, T B K Reddy1, Migun Shakya4, Jagadish Chandrabose Sundaramurthi1, Pajau Vangay1, Yaxing Wei3, Bruce E Wilson3, Shane Canon1, Patrick S G Chain4, Kjiersten Fagnan1, Stanton Martin3, Lee Ann McCue2, Christopher J Mungall1, Nigel J Mouncey1, Mary E Maxon1, Emiley A Eloe-Fadrosh5.   

Abstract

Mesh：

Year:  2020        PMID： 32350400     DOI： 10.1038/s41579-020-0377-0

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


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  9 in total

1.  Genomes OnLine Database (GOLD) v.8: overview and updates.

Authors:  Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Jagadish Chandrabose Sundaramurthi; Janey Lee; Mahathi Kandimalla; I-Min A Chen; Nikos C Kyrpides; T B K Reddy
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

2.  The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.

Authors:  I-Min A Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Neha Varghese; Rekha Seshadri; Simon Roux; Tanja Woyke; Emiley A Eloe-Fadrosh; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 3.  Priorities for ocean microbiome research.

Authors: 
Journal:  Nat Microbiol       Date:  2022-06-30       Impact factor: 30.964

Review 4.  Multi-Omics Strategies for Investigating the Microbiome in Toxicology Research.

Authors:  Ethan W Morgan; Gary H Perdew; Andrew D Patterson
Journal:  Toxicol Sci       Date:  2022-05-26       Impact factor: 4.109

5.  SKIOME Project: a curated collection of skin microbiome datasets enriched with study-related metadata.

Authors:  Giulia Agostinetto; Davide Bozzi; Danilo Porro; Maurizio Casiraghi; Massimo Labra; Antonia Bruno
Journal:  Database (Oxford)       Date:  2022-05-16       Impact factor: 4.462

6.  Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.

Authors:  Lauren M Lui; Erica L-W Majumder; Heidi J Smith; Hans K Carlson; Frederick von Netzer; Matthew W Fields; David A Stahl; Jizhong Zhou; Terry C Hazen; Nitin S Baliga; Paul D Adams; Adam P Arkin
Journal:  Front Microbiol       Date:  2021-03-24       Impact factor: 5.640

7.  PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types.

Authors:  Haris Zafeiropoulos; Savvas Paragkamian; Stelios Ninidakis; Georgios A Pavlopoulos; Lars Juhl Jensen; Evangelos Pafilis
Journal:  Microorganisms       Date:  2022-01-26

Review 8.  Solutions in microbiome engineering: prioritizing barriers to organism establishment.

Authors:  Michaeline B N Albright; Stilianos Louca; Daniel E Winkler; Kelli L Feeser; Sarah-Jane Haig; Katrine L Whiteson; Joanne B Emerson; John Dunbar
Journal:  ISME J       Date:  2021-08-21       Impact factor: 10.302

9.  Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population.

Authors:  Sudarshan A Shetty; Josine van Beek; Elske Bijvank; James Groot; Sjoerd Kuiling; Thijs Bosch; Debbie van Baarle; Susana Fuentes
Journal:  Sci Rep       Date:  2022-02-03       Impact factor: 4.379
  9 in total

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