Literature DB >> 32341514

A competing-risks model explains hierarchical spatial coupling of measles epidemics en route to national elimination.

Max S Y Lau1, Alexander D Becker2, Hannah M Korevaar2, Quentin Caudron2, Darren J Shaw3, C Jessica E Metcalf2, Ottar N Bjørnstad4, Bryan T Grenfell2,5.   

Abstract

Apart from its global health importance, measles is a paradigm for the low-dimensional mechanistic understanding of local nonlinear population interactions. A central question for spatio-temporal dynamics is the relative roles of hierarchical spread from large cities to small towns and metapopulation transmission among local small population clusters in measles persistence. Quantifying this balance is critical to planning the regional elimination and global eradication of measles. Yet, current gravity models do not allow a formal comparison of hierarchical versus metapopulation spread. We address this gap with a competing-risks framework, capturing the relative importance of competing sources of reintroductions of infection. We apply the method to the uniquely spatio-temporally detailed urban incidence dataset for measles in England and Wales, from 1944 to the infection's vaccine-induced nadir in the 1990s. We find that despite the regional influence of a few large cities (for example, London and Liverpool), metapopulation aggregation in neighbouring towns and cities played an important role in driving national dynamics in the prevaccination era. As vaccination levels increased in the 1970s and 1980s, the signature of spatially predictable spread diminished: increasingly, infection was introduced from unidentifiable random sources possibly outside regional metapopulations. The resulting erratic dynamics highlight the challenges of identifying shifting sources of infection and characterizing patterns of incidence in times of high vaccination coverage. More broadly, the underlying incidence and demographic data, accompanying this paper, will also provide an important resource for exploring nonlinear spatiotemporal population dynamics.

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Year:  2020        PMID: 32341514     DOI: 10.1038/s41559-020-1186-6

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  7 in total

1.  Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence.

Authors:  Moritz U G Kraemer; Verity Hill; Christopher Ruis; Simon Dellicour; Sumali Bajaj; John T McCrone; Guy Baele; Kris V Parag; Anya Lindström Battle; Bernardo Gutierrez; Ben Jackson; Rachel Colquhoun; Áine O'Toole; Brennan Klein; Alessandro Vespignani; Erik Volz; Nuno R Faria; David M Aanensen; Nicholas J Loman; Louis du Plessis; Simon Cauchemez; Andrew Rambaut; Samuel V Scarpino; Oliver G Pybus
Journal:  Science       Date:  2021-07-22       Impact factor: 63.714

2.  Structure, space and size: competing drivers of variation in urban and rural measles transmission.

Authors:  Hannah Korevaar; C Jessica Metcalf; Bryan T Grenfell
Journal:  J R Soc Interface       Date:  2020-07-08       Impact factor: 4.118

3.  Characterizing superspreading events and age-specific infectiousness of SARS-CoV-2 transmission in Georgia, USA.

Authors:  Max S Y Lau; Bryan Grenfell; Michael Thomas; Michael Bryan; Kristin Nelson; Ben Lopman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-20       Impact factor: 11.205

Review 4.  Development and dissemination of infectious disease dynamic transmission models during the COVID-19 pandemic: what can we learn from other pathogens and how can we move forward?

Authors:  Alexander D Becker; Kyra H Grantz; Sonia T Hegde; Sophie Bérubé; Derek A T Cummings; Amy Wesolowski
Journal:  Lancet Digit Health       Date:  2020-12-07

5.  Post-lockdown changes of age-specific susceptibility and its correlation with adherence to social distancing measures.

Authors:  Max S Y Lau; Carol Liu; Aaron J Siegler; Patrick S Sullivan; Lance A Waller; Kayoko Shioda; Benjamin A Lopman
Journal:  Sci Rep       Date:  2022-03-17       Impact factor: 4.996

Review 6.  Dissecting recurrent waves of pertussis across the boroughs of London.

Authors:  Arash Saeidpour; Shweta Bansal; Pejman Rohani
Journal:  PLoS Comput Biol       Date:  2022-04-14       Impact factor: 4.779

7.  Comparing and linking machine learning and semi-mechanistic models for the predictability of endemic measles dynamics.

Authors:  Max S Y Lau; Alex Becker; Wyatt Madden; Lance A Waller; C Jessica E Metcalf; Bryan T Grenfell
Journal:  PLoS Comput Biol       Date:  2022-09-08       Impact factor: 4.779

  7 in total

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