| Literature DB >> 32335340 |
Abstract
Coronavirus disease 2019 (COVID-19) emerged in Hubei Province, China in December 2019 and has since become a global pandemic, with hundreds of thousands of cases and over 165 countries affected. Primary routes of transmission of the causative virus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), are through respiratory droplets and close person-to-person contact. While information about other potential modes of transmission are relatively sparse, evidence supporting the possibility of a fecally mediated mode of transmission has been accumulating. Here, current knowledge on the potential for fecal transmission is briefly reviewed and the possible implications are discussed from a public health perspective.Entities:
Keywords: COVID-19; Coronavirus; Disease control; Fecal–oral transmission; Mode of transmission; Route of transmission; SARS-CoV-2
Mesh:
Year: 2020 PMID: 32335340 PMCID: PMC7195510 DOI: 10.1016/j.ijid.2020.04.057
Source DB: PubMed Journal: Int J Infect Dis ISSN: 1201-9712 Impact factor: 3.623
| Study | Date range of specimen collection | Geographic location | Definition of positive result | Relevant specimen type | Number of positive patients | Availability of test results on consecutive specimens | Gastrointestinal symptoms | Notes |
|---|---|---|---|---|---|---|---|---|
| Jan 1–Feb 17 | Hubei, Shandong, and Beijing, China | Detection of viral RNA: open reading frame lab (ORF1ab); Ct-value <40 | Fecal samples | 44/153 (29) | Not presented | Culture found viable virions in stool from 2 patients without diarrhea | It is unclear whether these 4 cultured samples were from unique patients | |
| Jan 27–Feb 9 | Jinhua, China | Detection of viral RNA; details not specified | Fecal samples | 5/14 (36) | Yes, some serial test results on fecal samples were available for 6 patients | No patients with diarrhea or vomiting noted | Small number of patients in combination with inconsistency in days of testing precludes formal conclusions | |
| – | Wuhan, China | Detection of viral RNA: spike gene; Ct-value <40 | Anal swabs | First day of sampling: 4/16 (25) | Yes, 4 patients initially negative for virus from anal swabs (and from oral swabs) on the first day of sampling became positive from anal swabs on the fifth day | – | The report indicates that a larger number of suspected patients were tested but not included in the detailed results because they were negative for viral RNA from all specimens collected (oral/anal swabs, blood, and serum), thus implying that they were not confirmed COVID-19 patients | |
| Jan 19–Feb 3 | Shanghai and Qingdao, China | Detection of viral RNA: ORF1ab and nucleoprotein gene; Ct-value <35 | Fecal samples | Day 3–13 after onset of illness: 5/6 (83) | Yes, 5 patients whose samples initially tested positive were retested and remained positive on follow-up test (day 18–30) | No diarrhea noted | Pediatric patients | |
| Feb 1–Feb 14 | Zhuhai, China | Detection of viral RNA: ORF1ab and nucleoprotein gene; Ct-value <37 | Fecal samples | 39/73 (53) | Yes, 17 (23%) remained positive in fecal samples after becoming respiratory sample-negative | A subset of patients (approx. 40%) who tested positive for viral RNA in fecal samples had diarrhea | Tissue samples from the esophagus, stomach, duodenum, and rectum were collected on day 10 of illness from one patient | |
| Feb 1–Feb 14 | Zhoushan, China | Detection of viral RNA: ORF1ab and nucleoprotein gene; reported that Ct-values for results considered positive were all <40, but threshold was not directly specified | Fecal samples | 1/3 (33) | Yes, 8 samples were obtained from the positive case in 2 weeks; the last two samples (from Feb 13 and Feb 14) were negative; all prior samples were positive | Case was asymptomatic | This study was a case report of one family (parents and 10-year-old male child) who were exposed to COVID-19 cases, but were asymptomatic | |
| Jan 23–Feb 25 | Singapore | Detection of viral RNA: ORF1ab, spike, and nucleoprotein gene; Ct-value <40 | Fecal samples | 4/8 (50) | Yes, for 6 total patients (3 were negative in all samples collected) | Authors reported that a subset of patients ( | - | |
| Jan 20–Feb 5 | AZ, CA, IL, MA, WA, and WI, United States | Detection of viral RNA; details not specified (appendix of laboratory methods unavailable at time of writing) | Fecal samples | 7/10 (70) | Yes, collected every 2–3 days, when possible, for first 17 days of illness | All 3 patients with diarrhea were positive for viral RNA in stool | Describes the first 12 cases in the USA | |
| Jan 20–Feb 10 | Shanghai, China | Laboratory test data were abstracted from medical records to determine whether samples were positive for viral RNA through RT-PCR | Fecal samples | 54/66 (82) | Yes, 11 (17%) still positive upon last observation | – | CD4 + T cell counts were correlated with duration of positivity in stool | |
| Jan–Feb | Guangzhou, China | Detection of viral RNA: ORF1ab and nucleoprotein gene; Ct-value not specified (Authors stated that positives were defined as one or both primer/probe sets providing a “reliable signal”) | Anal swabs | 11/28 (39) | Data from 1 patient with a repeat swab are presented | – | Higher proportion of patients with positive anal swabs had severe disease, but this was based on small numbers | |
| Jan | Guangdong, China | Detection of viral RNA: RdRp (RNA-dependent RNA polymerase) and spike genes; Ct-value not directly specified | Fecal samples | 0/7 (0) | No | Two patients with diarrhea were negative for viral RNA in stool, but the authors pointed out that timing of fecal specimen collection was after diarrhea had subsided | Family cluster | |
| Feb 4–Feb 20 | Kallang, Singapore | Detection of viral RNA: ORF1ab and nucleoprotein gene; all Ct-values reported as positive <40, but threshold was not directly specified | Fecal samples | 1/1 | Yes, negative on day 2 of hospitalization, positive on day 9 | No GI symptoms | 6-month-old infant was asymptomatic, with the exception of being febrile for ∼1 hour on day 2 while viremic | |
| Feb 1 | Heilongjiang, China | Culture through inoculation of stool suspension into cells, followed by virus detection through electron microscopy | Fecal sample | 1/1 (the report implies that specimens from other confirmed patients were processed, but virus was not detected in those specimens; however, the total number of specimens was not provided) | No | – | Duration between onset of illness and collection of the sample from which the virus was isolated was 15 days | |
| Jan 16 –Mar 15 | Zhuhai, China | Detection of viral RNA: RdRp, nucleoprotein, and membrane genes; Ct-value not directly specified | Fecal samples | 41/74 (55) | Yes, samples were collected every 1–2 days (as available) until 2 sequential negative results were observed | Authors stated that the presence of GI symptoms was not associated with viral RNA presence in fecal samples | It is notable that first symptom onset dates were used to calculate duration (rather than date of hospitalization, for example) |
Note: It is possible that some patients may be overlapping between studies. This cannot always be clarified based on publically available data. GI, gastrointestinal.
Year is 2020 for study publication and specimen collection dates (Jan, January; Feb, February; Mar, March).
Ct = cycle threshold for reverse-transcription polymerase chain reaction (RT-PCR). RT-PCR is the standard method used to detect viral RNA. Lower values correlate with higher viral copy numbers.
Unit of observation is the patient (not stool samples) in the prevalence of positive results.
Pertinent information provided as reported, if any were specifically noted to be among patients tested for viral markers using relevant specimens (e.g., stool or anal swabs). Note that not all studies provided enough details to definitively assess whether patients with GI symptoms were the same as those who tested positive/negative for viral markers in relevant specimens. Symptoms considered GI include diarrhea, nausea, vomiting, GI discomfort, or GI bleeding.
Anal swabs may not be as directly relevant to the topic under review as stool specimens for several reasons (e.g., differences in cell content), but are presented to provide a more comprehensive perspective.
Includes one case that was also reported by Holshue et al.; this reference has, therefore, been excluded from the table (Holshue et al., 2020).