Literature DB >> 32330171

Association of early viral lower respiratory infections and subsequent development of atopy, a systematic review and meta-analysis of cohort studies.

Sebastien Kenmoe1, Cyprien Kengne-Nde2, Abdou Fatawou Modiyinji1,3, Jean Joel Bigna4, Richard Njouom1.   

Abstract

INTRODUCTION: Existing evidence on the relationship between childhood lower respiratory tract infections (LRTI) and the subsequent atopy development is controversial. We aimed to investigate an association between viral LRTI at <5 years and the development of atopy at > 2 years.
METHODS: We conducted a search at Embase, Pubmed, Web of Science, and Global Index Medicus. We collected data from the included articles. We estimated the odds ratio and the 95% confidence intervals with a random effect model. We determined factors associated with atopy development after childhood LRTI using univariate and multivariate meta-regression analyses. We recorded this systematic review at PROSPERO with the number CRD42018116955.
RESULTS: We included 24 studies. There was no relationship between viral LRTI at <5 years and skin prick test-diagnosed-atopy (OR = 1.2, [95% CI = 0.7-2.0]), unknown diagnosed-atopy (OR = 0.7, [95% CI = 0.4-1.3]), atopic dermatitis (OR = 1.2, [95% CI = 0.9-1.6]), hyperreactivity to pollen (OR = 0.8, [95% CI = 0.3-2.7]), food (OR = 0.8, [95% CI = 0.3-2.5]), or house dust mite (OR = 1.1, [95% CI = 0.6-2.2]). Although not confirmed in all studies with a symmetric distribution of the 23 confounding factors investigated, the overall analyses showed that there was a relationship between childhood viral LRTI at < 5 years and serum test diagnosed-atopy (OR = 2.0, [95% CI = 1.0-4.1]), allergic rhinoconjunctivitis (OR = 1.7, [95% CI = 1.1-2.9]), hyperreactivity diagnosed by serum tests with food (OR = 5.3, [1.7-16.7]) or inhaled allergens (OR = 4.2, [95% CI = 2.1-8.5]), or furred animals (OR = 0.6, [95% CI = 0.5-0.9]).
CONCLUSION: These results suggest that there is no association between viral LRTI at < 5 years and the majority of categories of atopy studied during this work. These results, however, are not confirmed for the remaining categories of atopy and more particularly those diagnosed by serum tests. There is a real need to develop more accurate atopy diagnostic tools.

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Year:  2020        PMID: 32330171      PMCID: PMC7182231          DOI: 10.1371/journal.pone.0231816

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


Introduction

Atopy is a genetic predisposition to the development of allergic diseases such as atopic dermatitis, atopic eczema, atopic asthma, atopic conjunctivitis or allergic rhinitis [1]. Atopy also includes increased hypersensitivity to inhaled or food allergens, with the development of IgE mediated by Th2 cells [2]. Atopic diseases is associated to a significant morbidity and a very important economic burden for society[3]. Atopic disease prevalence has experienced in recent decades an exponential increase in the world [4,5]. Common viruses associated with lower respiratory tract infections (LRTI) include Influenza, Rhinovirus, Respiratory Syncytial Virus (HRSV), Metapneumovirus, Parainfluenzavirus, Enterovirus, Adenovirus, Bocavirus, and Coronavirus [6,7]. Data have showed the association between HRSV LRTI and subsequent wheezing or asthma [8-11]. With the advent of molecular assays, the description of childhood infections caused by non-HRSV has further demonstrated the implication of these diseases in long-term sequelae [12,13]. A meta-analysis by Liu et al., have demonstrated the association between childhood RV infections and the subsequent development of asthma [13]. A systematic review showed that pneumonia mainly due to Adenovirus was linked to sequelae including obstructive pulmonary disease or chronic bronchitis [12]. The subgroup analyses in this latter however found that the 3 included studies with Mycoplasma pneumoniae pneumonia were not associated with long-term sequelae [12]. Studies on the prevalence of atopy among people presenting with viral LRTI in childhood have shown divergent results [14-16]. Some studies have reported an increased risk of allergic sensitization after viral LRTI in childhood [14,17]. Protection against allergic sensitization through the stimulation of Th-1 cytokine production has been suggested by other studies [16]. Maximum confusion has been demonstrated by other studies that have shown no influence of childhood viral LRTI in the development risk of subsequent atopy [15,18,19]. The resolution of the question of the association between viral LRTI in childhood and the subsequent development of atopy could serve as a basis for preventive measures and management of atopic diseases [20-22]. The purpose of this systematic review and meta-analysis of Long-term sEquelAe of lower Respiratory tract infections iN Early childhood (A LEARNED study) was to investigate the association between viral LRTI at <5 years and the atopy development at > 2 years.

Methods

Research design

This systematic review was registered in PROSPERO (Registration number: CRD42018116955). The study was conducted following the Centre for Reviews and Dissemination guidelines [23] and reported according to the PRISMA (Preferred reporting items for systematic review and meta-analysis) guidelines (S1 Table) [24].

Inclusion criteria

Study participants were children with a history of laboratory confirmed viral LRTI before 5 years. Viral LRTI was considered using the definition proposed by the authors of the included studies. Children with viral LRTI, as reference cases, were compared to control children who had no history of LRTI in childhood. Studies including only participants with medical conditions (premature birth, immunodeficiency or other comorbidities) were excluded. The exposure in this systematic review was a viral LRTI in children at <5 years. The outcome of this systematic review was the development of atopy at> 2 years including atopic diseases and sensitization to food and atmospheric allergens. Atopic status was determined by skin prick tests (SPT) and total or allergen-specific serum IgE antibody assessed by immunoassays. Included studies were prospective and retrospective cohorts with a minimum follow-up duration of one year. Atopic diseases were diagnosed clinically. We considered atopy category whose data on outcomes were available in three or more studies.

Online search strategy and study selection

The Pubmed, Excerpta Medica Database, Web of Science, and Global Index Medicus databases were queried for articles published from inception through July 15, 2019. All languages and geographic areas were considered for this systematic review. The combination of terms used for the bibliographic search is listed in Table 1. We manually screened the included studies and relevant review reference lists to locate additional articles. Two independent investigators (KS and AFM) reviewed the titles and abstracts of the articles found by the electronic and manual search [25]. We summarized the selection process of potentially relevant articles on a PRISMA flowchart. The disagreements between the two investigators were resolved by discussion and consensus.
Table 1

Search strategy in Pubmed.

FieldKey words
#1 (Atopy)Atop* OR Allerg* OR Asthma* OR hypersensitivity OR "immunoglobulin E" OR "Ig E"
#2 (LRTI)LRTI OR ALRTI OR "Lower Respiratory Tract Infections" OR ALRI OR "Acute Lower Respiratory Infections" OR "Acute Lower Respiratory Tract Infections" OR SARI "Severe Acute Respiratory Infections" OR "Severe Acute Respiratory Illness" OR Bronchiolitis OR Pneumonia
#3 (Virus)Virus* OR "viral infect*" OR HRSV OR RSV OR "Human Respiratory Syncytial Virus" OR "Respiratory Syncytial Virus" OR HMPV OR MPV OR "Human Metapneumovirus" OR Metapneumovirus OR HAdV OR AdV OR Adenovirus OR "Human Adenovirus" OR HBoV OR BoV OR Bocavirus OR HCoV OR CoV OR Coronavirus OR 229E OR OC43 OR NL63 OR HKU1 OR HPIV OR Parainfluenzavirus OR PIV-1 OR PIV-2 OR PIV-3 OR PIV-4 OR HPIV-1 OR HPIV-2 OR HPIV-3 OR HPIV-4 OR Enterovirus OR Coxsackievirus OR Echovirus OR Parechovirus OR Rhinovirus OR Rhinoviruses OR Influenza
#4#1 AND #2 AND #3

Data extraction

Two researchers (KS and AFM) independently extracted data from full text of included articles. The following data was collected (title, first author, year of publication, time of data collection, country, participants interview period, LRTI type, LRTI rank, LRTI period, age at LRTI, virus associated with the LRTI, control age, control gender, total number of cases and controls, numbers with atopy at follow up, and data on confounders). The discrepancies were resolved by discussion and a consultation of a third arbitrator (RN) if necessary.

Quality assessment of included studies

In accordance with Newcastle-Ottawa Scale (NOS) criteria including patient selection, comparability of groups, and outcome evaluation, two independent researchers (KS and AFM) assessed the quality of all included studies [26] (S2 Table). To reach consensus, all the differences were discussed between the two researchers.

Data synthesis and analysis

We estimated Odds ratio (OR) as a measure of the association between childhood viral LRTI and subsequent atopy development. We evaluated the publication bias by visual inspection of funnel diagram and Egger test. We estimated heterogeneity between studies by the Q test and the I2 statistic [27,28]. We considered heterogeneity as significant between studies for p-value <0.1 or I2> 50%. We conducted sensitivity analyses with studies with a low risk of bias, studies including only inpatients or the first episode of viral LRTI. We performed subgroup analyses on the basis of the type of LRTI, WHO region, age at LRTI, age at follow up, and type of virus detected in LRTI. We applied a multivariate metaregression with a stepwise manual selection procedure to identify factors associated with the variation of overall risk of atopy. We successively removed from the model variables by considering the signification of the p-value and information criteria for the model like log-likelihood, deviance, Akaike information criterion (AIC), Bayesian information criterion (BIC), and corrected Akaike Information Criterion (AICc). We reported the explained heterogeneity (R2) by variables included in models. A variable with P value < 0.05 was considered statistically significant in the final model. We assessed the influence of confounding factors by conducting a sensitivity study that included only equitably distributed studies for each risk factor between reference cases and controls. For each potential confounding factor, we assessed the distribution between reference cases and controls by recalculating the p values using the exact tests of Fisher and Chi-2. The two p values> 0.05 of Fisher's exact test and Chi-2 indicated a symmetric distribution of the confounding factor between reference cases and controls.

Results

Literature search and characteristics of included studies

We synthesized the study selection process in Fig 1. The electronic (4634 articles) and manual (23 articles) searches identified 4657 articles. The first selection by titles and abstracts resulted in the exclusion of 4249 irrelevant articles. We read and fully reviewed the complete texts of the remaining 330 articles. We excluded a total of 309 articles for multiple reasons including mismatch of the study population (no control group, inclusion of non-viral LRTI and non-LRTI infections, and inclusion of only patients with underlying medical conditions), the type of study not appropriate (case report, comment on study, editorial, and review), lack of data on outcomes, conference abstract or complete texts not found, and irrelevance of the articleSupplementary. We finally included 22 articles (24 studies) in the qualitative and quantitative synthesis of this systematic review [29-50]. We showed the individual characteristics of the publications included in S3 Table. Most studies were conducted in Europe, detected HRSV, had a low risk of bias, included hospitalized children under 1 year of age with their first episode of bronchiolitis, had followed children between 5–10 years old, and were prospective. Children with a history of viral LRTI in childhood were recruited between 1960 and 2014 and articles were published between 1981 and 2017.The individual NOS score from the included studies are presented in S4 Table.
Fig 1

Study selection.

Comparison of reference cases with controls

The frequency of post-LRTI atopy was similar between reference cases and controls in most categories (atopy diagnosed with SPT, OR = 1.2, 95% CI = 0.7–2.0; atopy diagnosis unknown/not reported, OR = 0.7, 95% CI = 0.4–1.3; atopic dermatitis, OR = 1.2, 95% CI = 0.9–1.6; pollens, OR = 0.8, 95% CI = 0.3–2.7; food allergy, OR = 0.8, 95% CI = 0.3–2.5; and house dust mite, OR = 1.1, 95% CI = 0.6–2.2) (Fig 2, S1 Fig). With regard to atopy assess by serum test, we observed significant differences in favor of reference cases including positive serum test (OR = 2.0, 95% CI = 1.0–4.1), food positive serum test (OR = 5.3, 95% CI = 1.7–16.7), and inhalant positive serum test (OR = 4.2, 95 CI % = 2.1–8.5). In 8 studies, allergic rhinoconjunctivitis was significantly more frequently reported in reference cases than in controls (OR = 1.7, 95% CI = 1.0–2.9). Positivity for furred animals was significantly more frequent in controls compared to reference cases (OR = 0.6, 95% CI = 0.5–0.9). The overall effect remained unchanged for the majority of our results when assessed by sensitivity analyses of the impact of LRTI rank, hospitalization, and study quality (Table 2). The effect observed in the main analysis of the positive serum test was lost for studies reporting the first episodes of LRTI (OR = 2.0, 95% CI = 0.6–6.7) and hospitalized children (OR = 2.5, 95% CI = 0.9–6.5). In contrast to the association observed between LRTI history and development of allergic rhinoconjunctivitis (OR = 1.7, 95% CI = 1.1–2.9), no effect was observed for studies reporting the first episode of LRTI (OR = 1.4, 95% CI = 0.5–3.6). The significant preponderance of furred animal positivity in controls compared to reference cases was lost in studies including only the first LRTI episodes (OR = 0.5, 95% CI = 0.3–1.0).
Fig 2

Comparison of atopy in people with and without LRTI in infancy.

Table 2

Atopy development in children with and without lower respiratory tract infections in infancy.

OR (95%CI)95% Prediction intervalH (95%CI)N StudiesN LRTI casesN controlsI2§ (95%CI)P heterogeneityP Egger test
Atopy diagnosed by SPT
    - Overall1.2 [0.7–2.0][0.1–9.2]2.3 [1.9–2.9]161083765181.8 [71.4–88.3]< 0.0010,125
    - First episode of LRTI1.0 [0.6–1.8][0.2–5.6]1.6 [1–2.6]5283661259.7 [0–85]0,0420,193
    - Hospitalized1.4 [0.7–2.8][0.1–16]2.4 [1.8–3.1]1257782782.3 [70.3–89.4]< 0.0010,39
    - Low risk of bias1.2 [0.7–2.1][0.1–10]2.4 [1.9–3]151046761482.7 [72.7–89.1]< 0.0010,076
Positive serum test 
    - Overall2.0 [1.0–4.1][0.2–20.4]2.3 [1.6–3.3]763678081.4 [62.5–90.7]< 0.0010,165
    - First episode of LRTI2.0 [0.6–6.7]NANA17043NA1NA
    - Hospitalized2.5 [0.9–6.5][0.1–87.1]2.5 [1.7–3.8]524741884.1 [64.3–92.9]< 0.0010,188
    - Low risk of bias2.0 [1.0–4.1][0.2–20.4]2.3 [1.6–3.3]763678081.4 [62.5–90.7]< 0.0010,165
Atopy diagnosis unknown/not reported
    - Overall0.7 [0.4–1.3][0–41.3]1 [1–2.6]370990 [0–84.9]0,5030,872
    - First episode of LRTI1.0 [0.2–4.6]NANA11515NA1NA
    - Hospitalized0.6 [0.3–1.3]NA1 NA255846.7 NA0,301NA
    - Low risk of bias0.5 [0.2–1.5]NA1 NA235355.3 NA0,304NA
Allergic rhinoconjunctivitis
    - Overall1.7 [1.1–2.9][0.4–7]1.6 [1.1–2.3]837760759.3 [11.1–81.3]0,0160,615
    - First episode of LRTI1.4 [0.5–3.6]NA1 NA255600 NA0,993NA
    - Hospitalized1.7 [1.1–2.9][0.4–7]1.6 [1.1–2.3]837760759.3 [11.1–81.3]0,0160,615
    - Low risk of bias1.7 [1.1–2.9][0.4–7]1.6 [1.1–2.3]837760759.3 [11.1–81.3]0,0160,615
Atopic dermatitis
    - Overall1.2 [0.9–1.6][0.8–1.8]1.3 [1–1.7]15930119137.9 [0–66.4]0,0680,154
    - First episode of LRTI1.4 [0.8–2.5][0–63.8]1 [1–2.6]31281330 [0–85.3]0,4920,455
    - Hospitalized1.2 [0.9–1.6][0.8–1.8]1.3 [1–1.7]15930119137.9 [0–66.4]0,0680,154
    - Low risk of bias1.3 [0.9–1.8][0.6–2.8]1.3 [1–1.9]13858109045.1 [0–71.3]0,0390,224
Pollens
    - Overall0.8 [0.3–2.7][0–773146.5]2.3 [1.3–4.1]313422381.6 [42.8–94.1]0,0040,214
    - Hospitalized0.8 [0.3–2.7][0–773146.5]2.3 [1.3–4.1]313422381.6 [42.8–94.1]0,0040,214
    - Low risk of bias0.8 [0.3–2.7][0–773146.5]2.3 [1.3–4.1]313422381.6 [42.8–94.1]0,0040,214
Food allergy
    - Overall0.8 [0.3–2.5][0–26.7]1.3 [1–2.3]419529243.2 [0–81]0,1520,297
    - First episode of LRTI0.8 [0.2–3.8]NA1 NA255600 NA0,814NA
    - Hospitalized0.8 [0.3–2.5][0–26.7]1.3 [1–2.3]419529243.2 [0–81]0,1520,297
    - Low risk of bias0.8 [0.3–2.5][0–26.7]1.3 [1–2.3]419529243.2 [0–81]0,1520,297
Furred animals
    - Overall0.6 [0.5–0.9][0.4–0.9]1 [1–1.7]938271791 [0–65.1]0,4260,152
    - First episode of LRTI0.5 [0.3–1.0][0–44.7]1 [1 – 1]310366740 [0–0]0,9130,004
    - Hospitalized0.6 [0.5–0.9][0.4–0.9]1.1 [1–1.5]833456513.3 [0 – 56]0,3260,1
    - Low risk of bias0.6 [0.5–0.9][0.4–0.9]1 [1–1.7]938271791 [0–65.1]0,4260,152
House dust mite
    - Overall1.1 [0.6–2.2][0.2–6.8]1.4 [1–2.4]5255696152 [0–82.4]0,080,552
    - First episode of LRTI0.7 [0.3–1.6]NA1 NA212267380 NA0,385NA
    - Hospitalized1.6 [0.8–2.9][0.4–6]1.3 [1–2.2]420629641.1 [0–80.1]0,1650,032
    - Low risk of bias1.1 [0.6–2.2][0.2–6.8]1.4 [1–2.4]5255696152 [0–82.4]0,080,552
Positive serum test Food
    - Overall5.3 [1.7–16.7][0–1015892.4]1.9 [1–3.5]313026371.5 [3.4–91.6]0,030,369
    - Hospitalized5.3 [1.7–16.7][0–1015892.4]1.9 [1–3.5]313026371.5 [3.4–91.6]0,030,369
    - Low risk of bias5.3 [1.7–16.7][0–1015892.4]1.9 [1–3.5]313026371.5 [3.4–91.6]0,030,369
Positive serum test Inhalants
    - Overall4.2 [2.1–8.5][0–402.8]1.1 [1–3.3]313026310.5 [0–90.7]0,3270,814
    - Hospitalized4.2 [2.1–8.5][0–402.8]1.1 [1–3.3]313026310.5 [0–90.7]0,3270,814
    - Low risk of bias4.2 [2.1–8.5][0–402.8]1.1 [1–3.3]313026310.5 [0–90.7]0,3270,814

SPT: Skin prick test; LRTI: Lower respiratory tract infections; N: Number; 95% CI: 95% Confidence Interval; NA: Not Applicable

¶H is a measure of the extent of heterogeneity, a value of H = 1 indicates homogeneity of effects and a value of H >1indicates a potential heterogeneity of effects.

§: I2 describes the proportion of total variation in study estimates that is due to heterogeneity, a value > 50% indicates presence of heterogeneity

SPT: Skin prick test; LRTI: Lower respiratory tract infections; N: Number; 95% CI: 95% Confidence Interval; NA: Not Applicable ¶H is a measure of the extent of heterogeneity, a value of H = 1 indicates homogeneity of effects and a value of H >1indicates a potential heterogeneity of effects. §: I2 describes the proportion of total variation in study estimates that is due to heterogeneity, a value > 50% indicates presence of heterogeneity

Subgroup analyses and metaregression

In the subgroup analyses (S5 Table), a statistically significant association between childhood viral LRTI and subsequent atopy was observed only in the bronchiolitis subgroup for the categories of atopy diagnosed by serum test (OR = 3.1, 95% CI = 2.0–4.8; p < 0.001), and allergic rhinoconjunctivitis (OR = 2.3, 95% CI = 1.3–3.9; p = 0.021). Atopy diagnosed by SPT was in favor of controls in retrospective studies (OR = 0.6, 95% CI = 0.5–0.8, p = 0.014). The difference in the development of atopy by age group at the time of LRTI development was statistically significant for atopy diagnosed by serum tests (p = 0.002) and positive serum test for food (p = 0.019). Children with LRTI at <9 months were at increased risk for atopy diagnosed by serum tests (OR = 20.5, 95% CI = 4.4–95.9) and positive serum test for food (OR = 41.5, 95% CI = 5.2–330.0). The development of atopy according to the age of the patients varied significantly for atopy diagnosed by SPT (p = 0.004), atopy diagnosed by serum test (p = 0.004), positivity for house dust mite allergen (p = 0.046), and for positive serum test for food (p = 0.030). Atopy positivity by SPT varied transiently with an association between 2 and 5 years (OR = 3.3, 95% CI = 1.9–5.6) and then between 15 and 20 years (OR = 1.6, 95% CI = 1.1–2.4). Positivity to atopy by serum tests was not significantly associated only for patients 5 to 10 years (OR = 1.0, 95% CI = 0.5–2.1). Positivity to house dust mite allergen was only associated with patients aged 15 to 20 years (OR = 2.8, 95% CI = 1.0–7.6). The positivity to food allergens by serum test was inversely proportional to the age of the patients and the association was lost between 5 and 10 years (OR = 2.0, 95% CI = 0.7–5.3). There was no statistically significant difference by WHO region and viruses screened subgroups. In metaregression analyses, only the type of LRTI was admitted in the best multivariate model for the type of LRTI in the atopy diagnosed by SPT, atopy diagnosed by serum test, and allergic rhinoconjunctivitis (S6 Table). Follow-up delay of participants was positively associated with house dust mite and negatively associated with atopy diagnosed by serum test for food.

Confounding factors

A total of 84.8% (89/105) of the 23 confounding factors collected in the included studies had a symmetric distribution between reference cases and control participants (S7 Table). We conducted a sensitivity analysis that included only studies with symmetric distribution for these confounding factors for atopy categories with a significantly different distribution between reference cases and controls (atopy diagnosed by serum tests, positivity to food and inhalant allergens by serum tests, allergic rhinoconjunctivitis, and furred animals). The significant difference observed in the overall analysis was lost in the majority of these categories of atopy (S8 Table).

Heterogeneity and publication bias analysis

There was no heterogeneity in overall and sensitivity analyses for atopy with unknown or not reported diagnosis method, atopic dermatitis, food allergy, furred animals, and positive serum tests for inhalants (Table 2). The analyses of atopy diagnosed by SPT showed a publication bias (P Egger = 0.085). The funnel diagrams of the main analysis are presented in the S2–S12 Figs.

Discussion

Our results highlight that there is no relationship between a history of LRTI at < 5 years and atopy diagnosed by SPT, atopy diagnosed unknown/not reported, atopic dermatitis, and hyperresponsiveness to common allergens including pollen, food allergens or house dust mites. Our results on atopy diagnosed by serum tests, allergic rhinoconjunctivitis, and positivity by serum tests to food or inhaled allergens cannot be definite with an increased risk observed in the global analysis and not confirmed by the analyses in studies reporting confounding factors. The increased risks of developing atopy observed in some subgroup analyses were more frequent in case of bronchiolitis due to HRSV between 9–12 months and in prospective studies conducted in Europe. Our results are consistent with the quantitative analysis by Knyber et al. who concluded that there was no relationship between hospitalization for HRSV bronchiolitis at < 1 year and subsequent allergic sensitization [10]. Similar to the findings of this review, Kneyber et al. also concluded that HRSV infection in childhood was associated with allergic sensitization to food or inhaled allergens tested with serum tests. However, we have no definitive conclusion on this point since our analyses, taking into account studies with confounders, such as family history of atopy [51], did not confirm this finding. Similar to the findings of the present work, several studies have also shown divergent results between serum and skin tests [52-55]. There are many hypothetical reasons that may explain these observed differences between serum and skin test results. First, differences in the composition and/or concentration of skin and serum tests targets may lead to differences in the results of both tests [52]. In a context of immune immaturity, for example, insufficient migration of mast cells to the epidermis could lead to positive results for serum tests and false negative for skin tests. Serum tests also involve false positive results due to nonspecific binding with the antibodies used [56]. Technical differences in the handling of skin and serum tests may also be involved in the differences observed between the two methods [57]. The systematic review by Fauroux et al. reported for studies conducted between 1995 and 2015 in industrialized countries the controversial nature of the results on the association between infantile hospitalizations for HRSV LRTI and subsequent atopy [58]. Pérez-Yarza in a systematic review including children younger than 3 years with HRSV respiratory infection from 1985 to 2006 also suggested controversial findings about the subsequent risk of allergic sensitization development defined by positive skin or serum tests specific for common allergens [11].

Strengths and limitations

While this systematic review may help clarify the relationship between LRTI in childhood and subsequent atopy, the weaknesses of the work must be emphasized. More than three quarters of the included studies in this systematic review were from Europe. This suggests an important problem in the external validity of our results on a global scale, with the absence of America, South East Asia and Eastern Mediterranean. This systematic review is the only one to date to address this topic with a strict atopy definition with the consideration of 11 different categories depending on the type of diagnosis used, allergic diseases and sensitization to common allergens. This systematic review includes a multitude of sensitivity analyses with studies reporting their first episode of LRTI, studies reporting children hospitalized for LRTI, and quality of studies. Other special strengths of this systematic review include the large size of the participants included, 5294 reference cases and 27091 controls, the long follow-up period of more than half a century of children from birth to about 30 years old and with several points of follow-up including all age groups. The data was carefully extracted from a structured questionnaire and we used an appropriate data analysis to consider 23 important confounding variables.

Conclusions

No relationship was found in this systematic review between viral LRTI at <5 years and the subsequent development of a SPT-diagnosed atopy, sensitization to common allergens or the development of atopic dermatitis. This conclusion was not confirmed for the association between viral LRTI at < 5 years and the subsequent development of serum test diagnosed atopy, serum test positive for food or inhaled allergens, allergic rhinoconjunctivitis, and sensitization to furred animals. Thus, more longitudinal investigations adjusted to confounding factors are important to elucidate the implication of childhood LRTI in the development of atopy or allergy to food or inhalant assessed by serum tests, allergic rhinoconjunctivitis, and sensitization to furred animals. These findings should encourage research on the long-term burden of viral LRTI in childhood in non-European regions and non-HRSV viruses. Prospective randomized studies including intervention against the development of the LRTI would be ideal to rule out the residual confusion about the causal relationship between infantile LRTIs and the development of subsequent atopy. The imminent arrival of the vaccine against HRSV on the market or the prophylactic means such as palivizumab could be a way to carry out these interventional studies. To reduce the burden of atopy, there a real need of more accurate diagnosis tools and efforts should focus on other major risk factors including genetic predisposition, diet habits, air pollution, family size, and the use of vaccines or antibiotics.

PRISMA 2009 checklist.

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Items for risk of bias assessment.

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Individual characteristics of included studies.

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Risk of bias assessment.

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Subgroup analyses of atopy in children with LRTI in infancy and control without respiratory diseases.

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Metaregression analyses for the association of LRTI with subsequent atopy.

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P-value of Khi-2 and Fisher exact tests for qualitative confounding factors.

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Sensitivity analyses of the symmetrically distributed confounding factors.

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Forest plot of the comparison of atopy in people with and without LRTI in infancy.

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Funnel plot for publication for atopy diagnosed by skin prick tests.

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Funnel plot for publication for atopy diagnosed by serum tests.

(PDF) Click here for additional data file.

Funnel plot for publication for atopy diagnosis unknown/not reported.

(PDF) Click here for additional data file.

Funnel plot for publication for allergic rhinoconjunctivitis.

(PDF) Click here for additional data file.

Funnel plot for publication for atopic dermatitis.

(PDF) Click here for additional data file.

Funnel plot for publication for pollens.

(PDF) Click here for additional data file.

Funnel plot for publication for food allergy.

(PDF) Click here for additional data file.

Funnel plot for publication for furred animals.

(PDF) Click here for additional data file.

Funnel plot for publication for house dust mite.

(PDF) Click here for additional data file.

Funnel plot for publication for positive serum test for food.

(PDF) Click here for additional data file.

Funnel plot for publication for positive serum test for inhalants.

(PDF) Click here for additional data file. 9 Dec 2019 PONE-D-19-27663 Association of early viral lower respiratory infections and subsequent development of atopy, a systematic review and meta-analysis of cohort studies PLOS ONE Dear PhD Njouom, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Jan 23 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript: A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'. A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'. An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Renee W.Y. Chan, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1) Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2) Thank you for stating the following financial disclosure: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." Please provide an amended Funding Statement that declares *all* the funding or sources of support received during this specific study (whether external or internal to your organization) as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please state what role the funders took in the study.  If any authors received a salary from any of your funders, please state which authors and which funder. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 3) Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors choose an interesting but very challenging topic, unfortunately their strategy has some serious flaws which make this paper requires intensive amendment. 1. Abstract: Conclusion “These results suggest that there is no association between viral LRTI at <5 years and the subsequent atopy”. but the results suggest there is an association? 2. It is not clear why the authors chose this research question. The authors may consider adding more background information about the potential linkage of viral LRTI in early childhood and atopy. To me, this association could be due to immature immune of children, so they are more likely to have both viral infections and allergies, which may not indicate the infections increase the chance of allergy. Also, why did they only include viral LRTI? We know bacterial LRTI are very common in children too. The age cut-off for LRTI is 5yrs, but why is atopy set to >2yrs? The more intuitive definition could be incidence of atopy after the first episode of LRTI. 3. Their search strategy should be moved into main text since it is critical for a systematic review. The authors declare “Limit #3 to humans”, how did they achieve it? by screening title and abstract? or include keywords related to human? The keyword combinations should be standardised, eg. “Atopy OR allergy OR hypersensitivity OR allerg* OR atop* OR asthma OR asthma* OR “immunoglobulin E” OR “Ig E”, why quotation marks are added to some of keywords? also atop* includes atopy, and IgE is a standard term instead of Ig E. The title is viral LRTI but there is no keywords specifically for viral infections. Influenza is one of most common causes of viral infections but apparently excluded by the authors for no reasons. Hence I really doubt this strategy could have missed a lot of related papers. It is surprising to see no keywords related to children <2 yrs or >5yrs and cohort study design. 4. They authors did not define viral LRTI clearly, and total rely on the terms adopted by individual studies. Was it based on symptoms, clinical records, or has to be confirmed by lab results? If the last one, it should be noted that few studies have tested every participant for viral infections, so these cases could be seriously under-reported. 5. Table 1. It is more conventional to summarise study by study. Also I am surprising to see none of the selected studies were from the US and none tested for flu (because influenza was not included in search keywords?) 6. L72. No need to add “human” to every virus, since the studies were conducted in children. 7. L96. “Children with 97 viral LRTI, reference cases, were compared to control children who had no history of LRTI in childhood”. add “as” before reference cases to avoid confusion. 8. Supplemental Table 3. This table does not provide useful information. NOS score of each selected study should be added to the summary table. 9. Supplemental table 4 is not necessary. 10. L145, 146. what are Khi-2 and Chi-2? Both are Chi-square tests? Reviewer #2: This paper investigates the association between viral LRT1 in childhood and subsequent development of atopy through systematic review. Comments: There should be a discussion about the possible reason for the different results obtained by SPT and serum test. Page 4, line 77-78, why opposite meaning to the previous one “conversely”? Page 7, line 145 “Khi-2” – Chi-sq? Reviewer #3: The present is an interesting meta-analysis aiming to evaluate relationship between LRTI and atopy in 5 years The paper is well written and was recorded on PROSPERO. Abstract, It should be added if relationship was evalauted with multivariate model or not Methods. Random effect was correctly choosen. It should be added if data derived came from multivariate analysis or not. Meta regression for age and lenght of follow up should be added ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes: Fabrizio D'Ascenzo [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. 18 Jan 2020 Reviewer #1: The authors choose an interesting but very challenging topic, unfortunately their strategy has some serious flaws which make this paper requires intensive amendment. 1. Abstract: Conclusion “These results suggest that there is no association between viral LRTI at <5 years and the subsequent atopy”. but the results suggest there is an association? Authors: We thank the reviewer for this relevant comment. The conclusion has been modified and can now be read in the revised version as: "These results suggest that there is no association between LRTI at <5 years and the majority of categories of atopy studied in this work. This result, however, is not confirmed for the remaining categories of atopy and more particularly those diagnosed by serum tests. There is a real need to develop more accurate atopy diagnostic tools." 2. It is not clear why the authors chose this research question. The authors may consider adding more background information about the potential linkage of viral LRTI in early childhood and atopy. To me, this association could be due to immature immune of children, so they are more likely to have both viral infections and allergies, which may not indicate the infections increase the chance of allergy. Authors: We thank the reviewer for these thoughtful comments. A paragraph that clarifies the association between viral infections in childhood, primarily HRSV and RV, and the development of wheezing/asthma later was added in background. Data on the association between these viral LRTIs in childhood and the development of atopy later on contrary have remained conflictual to date. This is why we started the present work to determine the link between viral LRTI in childhood and the development of atopy later. Also, why did they only include viral LRTI? We know bacterial LRTI are very common in children too. Authors: Dear reviewer, thank you for this important comment. A first systematic review and meta-analysis has already been conducted on the long-term sequelae of pneumonia, including bacteria pneumonia (3 studies with Mycoplasma pneumoniae, 1 with Staphlococcus aureus, and 1 with Chlamydia pneumoniae) (Edmond et al., 2012, 10.1371 / journal.pone.0031239). The subgroup analyses in this meta-analysis had shown that the 3 included studies with Mycoplasma pneumoniae pneumonia were not associated with long-term sequelae. The authors agree with the reviewer that bacteria are also responsible for childhood LRTI and could therefore be associated with the development of atopy later. However, this was not the aim of the present study. We aimed at investigating the association between childhood LRTIs with laboratory confirmed viral infection and the subsequent atopy development. This objective still does not exclude the possibility of viral and bacterial co-infections in the studies that have been included. However, the majority of the authors of the included studies did not report the coinfections, so it is difficult for us to be able to discuss the contribution of bacteria in the effect reported in the present study. The age cut-off for LRTI is 5yrs, but why is atopy set to >2yrs? The more intuitive definition could be incidence of atopy after the first episode of LRTI. Authors: We thank the reviewer for this comment. We chose LRTI at <5 years since this is the most at risk age group for LRTI infections. Also, atopy at> 2 years is not link to any issue, since we only consider studies with the episode of atopy occurring after that of LRTI. We also have only 6 out of the 24 included studies that confirmed that participants were presenting the first episode of LRTI. We conducted sensitivity analyses with studies with participants having the first episode of LRTI and no difference in effect was observed compared to the overall results. These are all reasons why we keep our inclusion criteria without change. 3. Their search strategy should be moved into main text since it is critical for a systematic review. Authors: The search strategy is now presented in Table 1 of the main manuscript as suggested by the reviewer. Thanks for the comment. The authors declare “Limit #3 to humans”, how did they achieve it? by screening title and abstract? or include keywords related to human? Authors: Thanks to the reviewer for these comments. Unfortunately, we inadvertently submitted the article with an old version of the search strategy that we developed. We have included the final search strategy that does not contain this filter in the current version of the manuscript. This is actually a filter that is available by default in the Pubmed database that we used during the testing phase of our search strategies. The keyword combinations should be standardised, eg. “Atopy OR allergy OR hypersensitivity OR allerg* OR atop* OR asthma OR asthma* OR “immunoglobulin E” OR “Ig E”, why quotation marks are added to some of keywords? also atop* includes atopy, and IgE is a standard term instead of Ig E. Author: The final search strategy has been standardized as recommended by the reviewer, thanks for the comment. The title is viral LRTI but there is no keywords specifically for viral infections. Influenza is one of most common causes of viral infections but apparently excluded by the authors for no reasons. Hence I really doubt this strategy could have missed a lot of related papers. It is surprising to see no keywords related to children <2 yrs or >5yrs and cohort study design. Authors: The final research strategy that included the specific keywords of the study's major areas of interest is now clarified in the manuscript (LRTI, virus and atopy). We opted for a very sensitive search strategy to increase our chances of not missing relevant articles. The included studies were longitudinal and some followed patients even until the age of 30. We therefore considered appropriate to not restrict the age of the participants according to our inclusion criteria (<2 years or <5 years). Similarly, the study design specific keywords are not always reported by some authors reason why we did not associate restriction according to this criterion in our search strategy. 4. They authors did not define viral LRTI clearly, and total rely on the terms adopted by individual studies. Was it based on symptoms, clinical records, or has to be confirmed by lab results? If the last one, it should be noted that few studies have tested every participant for viral infections, so these cases could be seriously under-reported. Authors: We thank reviewer for the comment. The 24 included studies in the present systematic review confirmed laboratory viral infection in all participants. This was the main eligibility criterion. We have now added individual LRTI case definitions for each study included in the supplementary table 4 of individual data of included studies. Case definitions were based on clinical symptoms recorded in hospitals prospectively or in secure databases or radiographic exams. 5. Table 1. It is more conventional to summarise study by study. Authors: We thank reviewer for the comment. We have now removed Table 1. The supplementary table 4 of individual data of included studies is now to be considered for the description of included studies. Also I am surprising to see none of the selected studies were from the US and none tested for flu (because influenza was not included in search keywords?) Authors: Only two included studies had performed the detection of common respiratory viruses including Influenza virus (Nicolai, 2017 et al., doi: 10.1097/INF.0000000000001385 and Ruotsalainen et al., 2013, doi: 10.1002/ppul.22692). Indeed, to date most studies on the long-term sequelae of LRTI in childhood have focused mainly on the involvement of HRSV bronchiolitis in the development of subsequent wheezing or asthma. Authors agree with the reviewer that many of the eligible studies examined were conducted in the US but none of these studies met the inclusion criteria of the present article. 6. L72. No need to add “human” to every virus, since the studies were conducted in children. Authors: We thank reviewer for this comment, the text is now modified accordingly. 7. L96. “Children with 97 viral LRTI, reference cases, were compared to control children who had no history of LRTI in childhood”. add “as” before reference cases to avoid confusion. Authors: We thank reviewer for this comment, the text is now modified accordingly. 8. Supplemental Table 3. This table does not provide useful information. NOS score of each selected study should be added to the summary table. Authors: A supplementary table 3 that specifying the NOS scale ratings has been added to the appendix. 9. Supplemental table 4 is not necessary. Authors: Thank you for the comment, the supplementary table 4 has been removed. 10. L145, 146. what are Khi-2 and Chi-2? Both are Chi-square tests? Authors: Yes both are Chi-square tests, the manuscript is now corrected accordingly. Reviewer #2: This paper investigates the association between viral LRT1 in childhood and subsequent development of atopy through systematic review. Comments: There should be a discussion about the possible reason for the different results obtained by SPT and serum test. Authors: We really appreciate the suggestion. The following paragraph has been added in discussion section. "Similar to the findings of the present work, several studies have also shown divergent results between serum and skin tests [1-4]. There are many hypothetical reasons that may explain these observed differences between serum and skin test results. First, differences in the composition and/or concentration of skin and serum tests targets may lead to differences in the results of both tests [1]. In a context of immune immaturity, for example, insufficient migration of mast cells to the epidermis could lead to positive results for serum tests and false negative for skin tests. Serum tests also involve false positive results due to nonspecific binding with the antibodies used [5]. Technical differences in the handling of skin and serum tests may also be involved in the differences observed between the two methods [6]." Page 4, line 77-78, why opposite meaning to the previous one “conversely”? Authors: "conversely" has been removed, thank for the comment. Page 7, line 145 “Khi-2” – Chi-sq? Authors: Both are Chi-square tests; the manuscript is now corrected accordingly. Reviewer #3: The present is an interesting meta-analysis aiming to evaluate relationship between LRTI and atopy in 5 years The paper is well written and was recorded on PROSPERO. Abstract, It should be added if relationship was evalauted with multivariate model or not Authors: Thank you to the reviewer for this suggestion. We have now specified in the abstract that we have performed multivariate metaregresssion. Methods. Random effect was correctly choosen. It should be added if data derived came from multivariate analysis or not. Authors: We performed multivariate analyzes only in metaregression. However, we have not obtained any multivariate metaregression model including two or more factors associated with the development of atopy following LRTI. Meta regression for age and lenght of follow up should be added Authors: Thanks to the reviewers for this suggestion, we have now done a metaregression to find the factors linked to the development of atopy following childhood LRTI. We have added the corresponding methodology and the results obtained (Supplementary Table 6). We only considered the length of follow-up of the children in the model since it represents the difference between the age at the end and at the start of follow-up. Submitted filename: Response to Reviewers PONE-D-19-27663.docx Click here for additional data file. 9 Mar 2020 PONE-D-19-27663R1 Association of early viral lower respiratory infections and subsequent development of atopy, a systematic review and meta-analysis of cohort studies PLOS ONE Dear PhD Njouom, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please address the concern raised by Reviewer 3. We would appreciate receiving your revised manuscript by Apr 23 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript: A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'. A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'. An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Renee W.Y. Chan, Ph.D. Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: The manuscript is much improved after the revision. The authors have addressed all my questions. I have no further comments. Reviewer #3: The most relevant problem there is the level of evidence. That is the measure of association do not derive from multivariate analysis of original studies but from multivariate metaregression which is totally different. This should be' clearly stated. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes: Fabrizio D'Ascenzo [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. 9 Mar 2020 Reviewer #1: (No Response) We thank the reviewers for their relevant comments. Reviewer #2: The manuscript is much improved after the revision. The authors have addressed all my questions. I have no further comments. We thank the reviewers for their relevant comments. Reviewer #3: The most relevant problem there is the level of evidence. That is the measure of association do not derive from multivariate analysis of original studies but from multivariate metaregression which is totally different. This should be' clearly stated. We thank to the reviewer for this suggestion. We had previously specified in the abstract that we had conducted multivariate metaregression (Page 2, Line 30). We have now precise also in Methods section that we have performed multivariate metaregression (Page 8, Line 157). Submitted filename: Response to Reviewers PONE-D-19-27663.docx Click here for additional data file. 2 Apr 2020 Association of early viral lower respiratory infections and subsequent development of atopy, a systematic review and meta-analysis of cohort studies PONE-D-19-27663R2 Dear Dr. Njouom, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Renee W.Y. Chan, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: 8 Apr 2020 PONE-D-19-27663R2 Association of early viral lower respiratory infections and subsequent development of atopy, a systematic review and meta-analysis of cohort studies Dear Dr. Njouom: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Renee W.Y. Chan Academic Editor PLOS ONE
  55 in total

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Authors:  B Zweiman; W F Schoenwetter; J E Pappano; B Tempest; E A Hildreth
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3.  Risk Factors for Virus-induced Acute Respiratory Tract Infections in Children Younger Than 3 Years and Recurrent Wheezing at 36 Months Follow-Up After Discharge.

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Journal:  Pediatr Infect Dis J       Date:  2017-02       Impact factor: 2.129

4.  Asthma and allergy patterns over 18 years after severe RSV bronchiolitis in the first year of life.

Authors:  Nele Sigurs; Fatma Aljassim; Bengt Kjellman; Paul D Robinson; Fridrik Sigurbergsson; Ragnar Bjarnason; Per M Gustafsson
Journal:  Thorax       Date:  2010-06-27       Impact factor: 9.139

5.  Severe respiratory syncytial virus bronchiolitis in infancy and asthma and allergy at age 13.

Authors:  Nele Sigurs; Per M Gustafsson; Ragnar Bjarnason; Fredrik Lundberg; Susanne Schmidt; Fridrik Sigurbergsson; Bengt Kjellman
Journal:  Am J Respir Crit Care Med       Date:  2004-10-29       Impact factor: 21.405

6.  Respiratory morbidity 20 years after RSV infection in infancy.

Authors:  M Korppi; E Piippo-Savolainen; K Korhonen; S Remes
Journal:  Pediatr Pulmonol       Date:  2004-08

Review 7.  Investigating international time trends in the incidence and prevalence of atopic eczema 1990-2010: a systematic review of epidemiological studies.

Authors:  Ivette A G Deckers; Susannah McLean; Sanne Linssen; Monique Mommers; C P van Schayck; Aziz Sheikh
Journal:  PLoS One       Date:  2012-07-11       Impact factor: 3.240

Review 8.  Association between rhinovirus wheezing illness and the development of childhood asthma: a meta-analysis.

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