Literature DB >> 32325168

Genomic diversity of the human pathogen Paracoccidioides across the South American continent.

Marcus de Melo Teixeira1, Maria Emilia Cattana2, Daniel R Matute3, José F Muñoz4, Alicia Arechavala5, Kristin Isbell3, Rafael Schipper6, Gabriela Santiso5, Fernanda Tracogna7, María de Los Ángeles Sosa8, Norma Cech9, Primavera Alvarado10, Laura Barreto11, Yone Chacón12, Juana Ortellado13, Cleoni Mendes de Lima14, Marilene Rodrigues Chang15, Gustavo Niño-Vega16, Maria Aparecida Shikanai Yasuda17, Maria Sueli Soares Felipe18, Ricardo Negroni5, Christina A Cuomo4, Bridget Barker19, Gustavo Giusiano20.   

Abstract

Paracoccidioidomycosis (PCM) is a life-threatening systemic mycosis widely reported in the Gran Chaco ecosystem. The disease is caused by different species from the genus Paracoccidioides, which are all endemic to South and Central America. Here, we sequenced and analyzed 31 isolates of Paracoccidioides across South America, with particular focus on isolates from Argentina and Paraguay. The de novo sequenced isolates were compared with publicly available genomes. Phylogenetics and population genomics revealed that PCM in Argentina and Paraguay is caused by three distinct Paracoccidioides genotypes, P. brasiliensis (S1a and S1b) and P. restrepiensis (PS3). P. brasiliensis S1a isolates from Argentina are frequently associated with chronic forms of the disease. Our results suggest the existence of extensive molecular polymorphism among Paracoccidioides species, and provide a framework to begin to dissect the connection between genotypic differences in the pathogen and the clinical outcomes of the disease.
Copyright © 2020. Published by Elsevier Inc.

Entities:  

Keywords:  Gran Chaco; Paracoccidioides; Phylogenomics; Population genetics

Year:  2020        PMID: 32325168      PMCID: PMC7385733          DOI: 10.1016/j.fgb.2020.103395

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN: 1087-1845            Impact factor:   3.495


  48 in total

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Authors:  Ferry Hagen; Kantarawee Khayhan; Bart Theelen; Anna Kolecka; Itzhack Polacheck; Edward Sionov; Rama Falk; Sittiporn Parnmen; H Thorsten Lumbsch; Teun Boekhout
Journal:  Fungal Genet Biol       Date:  2015-02-23       Impact factor: 3.495

2.  Histoplasmin and paracoccidioidin skin reactivity in infantile population of northern Argentina (1).

Authors:  M Mangiaterra; J Alonso; M Galvan; G Giusiano; J Gorodner
Journal:  Rev Inst Med Trop Sao Paulo       Date:  1996 Sep-Oct       Impact factor: 1.846

Review 3.  Fungal species boundaries in the genomics era.

Authors:  Daniel R Matute; Victoria E Sepúlveda
Journal:  Fungal Genet Biol       Date:  2019-07-04       Impact factor: 3.495

4.  Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak.

Authors:  James A Fraser; Steven S Giles; Emily C Wenink; Scarlett G Geunes-Boyer; Jo Rae Wright; Stephanie Diezmann; Andria Allen; Jason E Stajich; Fred S Dietrich; John R Perfect; Joseph Heitman
Journal:  Nature       Date:  2005-10-09       Impact factor: 49.962

5.  Mortality due to systemic mycoses as a primary cause of death or in association with AIDS in Brazil: a review from 1996 to 2006.

Authors:  Marli Prado; Marcelo Barbosa da Silva; Ruy Laurenti; Luiz R Travassos; Carlos P Taborda
Journal:  Mem Inst Oswaldo Cruz       Date:  2009-05       Impact factor: 2.743

6.  Emergence of acute/subacute infant-juvenile paracoccidioidomycosis in Northeast Argentina: Effect of climatic and anthropogenic changes?

Authors:  Gustavo Giusiano; Clarisa Aguirre; Claudia Vratnica; Florencia Rojas; Teresa Corallo; María Emilia Cattana; Mariana Fernández; Javier Mussin; María de Los Angeles Sosa
Journal:  Med Mycol       Date:  2019-01-01       Impact factor: 4.076

7.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

8.  Paracoccidioides species complex: ecology, phylogeny, sexual reproduction, and virulence.

Authors:  Marcus M Teixeira; Raquel C Theodoro; Gustavo Nino-Vega; Eduardo Bagagli; Maria S S Felipe
Journal:  PLoS Pathog       Date:  2014-10-30       Impact factor: 6.823

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  Recent admixture between species of the fungal pathogen Histoplasma.

Authors:  Colin S Maxwell; Victoria E Sepulveda; David A Turissini; William E Goldman; Daniel R Matute
Journal:  Evol Lett       Date:  2018-06-22
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  9 in total

1.  PbGP43 Genotyping Using Paraffin-Embedded Biopsies of Human Paracoccidioidomycosis Reveals a Genetically Distinct Lineage in the Paracoccidioides brasiliensis Complex.

Authors:  Giannina Ricci; Emeline Boni Campanini; Angela Satie Nishikaku; Rosana Puccia; Mariângela Marques; Ralf Bialek; Anderson Messias Rodrigues; Wagner Luiz Batista
Journal:  Mycopathologia       Date:  2021-12-06       Impact factor: 2.574

Review 2.  One Century of Study: What We Learned about Paracoccidioides and How This Pathogen Contributed to Advances in Antifungal Therapy.

Authors:  Erika Seki Kioshima; Patrícia de Souza Bonfim de Mendonça; Marcus de Melo Teixeira; Isis Regina Grenier Capoci; André Amaral; Franciele Abigail Vilugron Rodrigues-Vendramini; Bruna Lauton Simões; Ana Karina Rodrigues Abadio; Larissa Fernandes Matos; Maria Sueli Soares Felipe
Journal:  J Fungi (Basel)       Date:  2021-02-02

3.  zzm321990 Paracoccidioides brasiliensis Isolated from Nine-Banded Armadillos (Dasypus novemcinctus) Reveal Population Structure and Admixture in the Amazon Basin.

Authors:  Eduardo Bagagli; Daniel Ricardo Matute; Hans Garcia Garces; Bernardo Guerra Tenório; Adalberto Garcia Garces; Lucas Gomes de Brito Alves; Danielle Hamae Yamauchi; Marluce Francisca Hrycyk; Bridget Marie Barker; Marcus de Melo Teixeira
Journal:  J Fungi (Basel)       Date:  2021-01-15

4.  Immunoproteomic Analysis Reveals Novel Candidate Antigens for the Diagnosis of Paracoccidioidomycosis Due to Paracoccidioides lutzii.

Authors:  Anderson Messias Rodrigues; Paula Helena Kubitschek-Barreira; Breno Gonçalves Pinheiro; André Teixeira-Ferreira; Rosane Christine Hahn; Zoilo Pires de Camargo
Journal:  J Fungi (Basel)       Date:  2020-12-11

5.  A New Duplex PCR-Assay for the Detection and Identification of Paracoccidioides Species.

Authors:  Breno Gonçalves Pinheiro; Ana Paula Pôssa; Paula Portella Della Terra; Jamile Ambrósio de Carvalho; Giannina Ricci; Angela Satie Nishikaku; Rosane Christine Hahn; Zoilo Pires de Camargo; Anderson Messias Rodrigues
Journal:  J Fungi (Basel)       Date:  2021-02-26

6.  Exploring genetic diversity, population structure, and phylogeography in Paracoccidioides species using AFLP markers.

Authors:  T N Roberto; J A de Carvalho; M A Beale; F Hagen; M C Fisher; R C Hahn; Z P de Camargo; A M Rodrigues
Journal:  Stud Mycol       Date:  2021-11-30       Impact factor: 16.097

7.  Molecular epidemiology of Paracoccidiodes spp. recovered from patients with paracoccidioidomycosis in a teaching hospital from Minas Gerais State of Brazil.

Authors:  Juliana Andrade-Silva; Leonardo Euripedes Andrade-Silva; Hugo Costa Paes; Lucas Alves; Adair Rosa; Bernardo Guerra Tenório; Marcelo Simão Ferreira; Maria Sueli Soares Felipe; Marcus de Melo Teixeira; Mario León Silva-Vergara
Journal:  PLoS Negl Trop Dis       Date:  2021-11-29

8.  The taxonomy of two uncultivated fungal mammalian pathogens is revealed through phylogeny and population genetic analyses.

Authors:  Raquel Vilela; Marianne Huebner; Camila Vilela; Gabriella Vilela; Bruno Pettersen; Claudia Oliveira; Leonel Mendoza
Journal:  Sci Rep       Date:  2021-09-13       Impact factor: 4.379

Review 9.  Molecular Tools for Detection and Identification of Paracoccidioides Species: Current Status and Future Perspectives.

Authors:  Breno Gonçalves Pinheiro; Rosane Christine Hahn; Zoilo Pires de Camargo; Anderson Messias Rodrigues
Journal:  J Fungi (Basel)       Date:  2020-11-18
  9 in total

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