Literature DB >> 32320378

Nocardiopsis deserti sp. nov., isolated from a high altitude Atacama Desert soil.

Mipeshwaree Devi Asem1,2, Nimaichand Salam2, Hamidah Idris3,4, Xiao-Tong Zhang2, Alan T Bull5, Wen-Jun Li2, Michael Goodfellow4.   

Abstract

The taxonomic status of a Nocardiopsis strain, designated H13T, isolated from a high altitude Atacama Desert soil, was established by using a polyphasic approach. The strain was found to have chemotaxonomic, cultural and morphological characteristics consistent with its classification within the genus Nocardiopsis and formed a well-supported clade in the Nocardiopsis phylogenomic tree together with the type strains of Nocardiopsis alborubida, Nocardiopsis dassonvillei and Nocardiopsis synnematoformans. Strain H13T was distinguished from its closest relatives by low average nucleotide identity (93.2-94.9 %) and in silico DNA-DNA hybridization (52.5-62.4 %) values calculated from draft genome assemblies and by a range of phenotypic properties. On the basis of these results, it is proposed that the isolate be assigned to the genus Nocardiopsis as Nocardiopsis deserti sp. nov. with isolate H13T (=CGMCC 4.7585T=KCTC 49249T) as the type strain.

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Keywords:  Atacama desert; Nocardiopsis deserti sp. nov; genomics; polyphasic taxonomy

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Year:  2020        PMID: 32320378     DOI: 10.1099/ijsem.0.004158

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  1 in total

1.  Haloterrigena gelatinilytica sp. nov., a new extremely halophilic archaeon isolated from salt-lake.

Authors:  Bing-Bing Liu; Nimaichand Salam; Manik Prabhu Narsing Rao; Shuang Cheng; Yuan-Guo Xie; Lai-You Wang; Yuan-Ru Zhang; Xin-Yuan Yu; Shu-Xian Guo; Wen-Jun Li
Journal:  Arch Microbiol       Date:  2022-02-15       Impact factor: 2.552

  1 in total

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